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      Identification of the variant Ala335Val of MED25 as responsible for CMT2B2: molecular data, functional studies of the SH3 recognition motif and correlation between wild-type MED25 and PMP22 RNA levels in CMT1A animal models

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          Abstract

          Charcot-Marie-Tooth (CMT) disease is a clinically and genetically heterogeneous disorder. All mendelian patterns of inheritance have been described. We identified a homozygous p.A335V mutation in the MED25 gene in an extended Costa Rican family with autosomal recessively inherited Charcot-Marie-Tooth neuropathy linked to the CMT2B2 locus in chromosome 19q13.3. MED25, also known as ARC92 and ACID1, is a subunit of the human activator-recruited cofactor (ARC), a family of large transcriptional coactivator complexes related to the yeast Mediator. MED25 was identified by virtue of functional association with the activator domains of multiple cellular and viral transcriptional activators. Its exact physiological function in transcriptional regulation remains obscure. The CMT2B2-associated missense amino acid substitution p.A335V is located in a proline-rich region with high affinity for SH3 domains of the Abelson type. The mutation causes a decrease in binding specificity leading to the recognition of a broader range of SH3 domain proteins. Furthermore, Med25 is coordinately expressed with Pmp22 gene dosage and expression in transgenic mice and rats. These results suggest a potential role of this protein in the molecular etiology of CMT2B2 and suggest a potential, more general role of MED25 in gene dosage sensitive peripheral neuropathy pathogenesis.

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          Most cited references49

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          The Pfam protein families database.

          Pfam is a large collection of protein families and domains. Over the past 2 years the number of families in Pfam has doubled and now stands at 6190 (version 10.0). Methodology improvements for searching the Pfam collection locally as well as via the web are described. Other recent innovations include modelling of discontinuous domains allowing Pfam domain definitions to be closer to those found in structure databases. Pfam is available on the web in the UK (http://www.sanger.ac.uk/Software/Pfam/), the USA (http://pfam.wustl.edu/), France (http://pfam.jouy.inra.fr/) and Sweden (http://Pfam.cgb.ki.se/).
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            MOLMOL: a program for display and analysis of macromolecular structures.

            MOLMOL is a molecular graphics program for display, analysis, and manipulation of three-dimensional structures of biological macromolecules, with special emphasis on nuclear magnetic resonance (NMR) solution structures of proteins and nucleic acids. MOLMOL has a graphical user interface with menus, dialog boxes, and on-line help. The display possibilities include conventional presentation, as well as novel schematic drawings, with the option of combining different presentations in one view of a molecule. Covalent molecular structures can be modified by addition or removal of individual atoms and bonds, and three-dimensional structures can be manipulated by interactive rotation about individual bonds. Special efforts were made to allow for appropriate display and analysis of the sets of typically 20-40 conformers that are conventionally used to represent the result of an NMR structure determination, using functions for superimposing sets of conformers, calculation of root mean square distance (RMSD) values, identification of hydrogen bonds, checking and displaying violations of NMR constraints, and identification and listing of short distances between pairs of hydrogen atoms.
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              Main-chain bond lengths and bond angles in protein structures.

              The main-chain bond lengths and bond angles of protein structures are analysed as a function of resolution. Neither the means nor standard deviations of these parameters show any correlation with resolution over the resolution range investigated. This is as might be expected as bond lengths and bond angles are likely to be heavily influenced by the geometrical restraints applied during structure refinement. The size of this influence is then investigated by performing an analysis of variance on the mean values across the five most commonly used refinement methods. The differences in means are found to be highly statistically significant, suggesting that the different target values used by the different methods leave their imprint on the structures they refine. This has implications concerning the actual target values used during refinement and stresses the importance of the values being not only accurate but also consistent from one refinement method to another.
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                Author and article information

                Contributors
                +49-89-30908860 , +49-89-309088666 , rautenstrauss@mgz-muenchen.de
                Journal
                Neurogenetics
                Neurogenetics
                Springer-Verlag (Berlin/Heidelberg )
                1364-6745
                1364-6753
                17 March 2009
                17 March 2009
                October 2009
                : 10
                : 4
                : 275-287
                Affiliations
                [1 ]Institute of Human Genetics, Friedrich-Alexander University, Schwabachanlage 10, 91054 Erlangen, Germany
                [2 ]School of Biology and Institute for Health Research (INISA), University of Costa Rica, San José, Costa Rica
                [3 ]School of Biology and Neuroscience Research Program, University of Costa Rica, San Jose, Costa Rica
                [4 ]Institute of Biochemistry, Friedrich-Alexander University, Emil-Fischer-Zentrum, Fahrstraße 17, 91054 Erlangen, Germany
                [5 ]HPM-II E39, Institute of Cell Biology, ETH Hönggerberg, Swiss Federal Institute of Technology (ETH), 8093 Zürich, Switzerland
                [6 ]School of Biological Sciences, Universidad Nacional, Heredia, Costa Rica
                [7 ]Laboratory of Neurology, Neurolab, San José, Costa Rica
                [8 ]Department of Molecular and Human Genetics, Baylor College of Medicine, One Baylor Plaza, Room 601B, Houston, TX 77030 USA
                [9 ]School of Biology, University of Costa Rica, San Jose, Costa Rica
                [10 ]Department of Neurology, University of Münster, Albert-Schweitzer-Str. 33, 48129 Münster, Germany
                [11 ]Klinikum der Justus-Liebig-Universität, 35385 Gießen, Germany
                [12 ]Department of Neurology, Friedrich-Alexander University, Schwabachanlage 6, 91054 Erlangen, Germany
                [13 ]Schweizerisches Epilepsie-Zentrum, Bleulerstr. 60, 8008 Zurich, Switzerland
                [14 ]Gene Expression, Institute of Immunology, GSF-National Research Center for Environment and Health, Marchioninistr. 25, 81375 Munich, Germany
                [15 ]Department of Neurogenetics, Max-Planck-Institute of Experimental Medicine, Hermann-Rein-Str. 3, 37075 Göttingen, Germany
                [16 ]Medizinisch Genetisches Zentrum, Bayerstrasse 3-5, 80335 Munich, Germany
                Article
                183
                10.1007/s10048-009-0183-3
                2847151
                19290556
                db515e03-b0a9-4531-8e81-6655ea4b5c3b
                © Springer-Verlag 2009
                History
                : 8 October 2008
                : 19 February 2009
                Categories
                Original Article
                Custom metadata
                © Springer-Verlag 2009

                Genetics
                hmsn,acid1,pmp22,med25,cmt2b2,cmt,arc92
                Genetics
                hmsn, acid1, pmp22, med25, cmt2b2, cmt, arc92

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