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      Rfam: an RNA family database

      Nucleic Acids Research
      Oxford University Press (OUP)

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          Abstract

          Rfam is a collection of multiple sequence alignments and covariance models representing non-coding RNA families. Rfam is available on the web in the UK at http://www.sanger.ac.uk/Software/Rfam/ and in the US at http://rfam.wustl.edu/. These websites allow the user to search a query sequence against a library of covariance models, and view multiple sequence alignments and family annotation. The database can also be downloaded in flatfile form and searched locally using the INFERNAL package (http://infernal.wustl.edu/). The first release of Rfam (1.0) contains 25 families, which annotate over 50 000 non-coding RNA genes in the taxonomic divisions of the EMBL nucleotide database.

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          Author and article information

          Journal
          Nucleic Acids Research
          Oxford University Press (OUP)
          13624962
          January 1 2003
          : 31
          : 1
          : 439-441
          Article
          10.1093/nar/gkg006
          165453
          12520045
          db68fbc7-b62f-47a5-b63f-4227d10d011c
          © 2003
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