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      Exploring water radiolysis in proton cancer therapy: Time-dependent, non-adiabatic simulations of H + + (H 2O) 1-6

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          Abstract

          To elucidate microscopic details of proton cancer therapy (PCT), we apply the simplest-level electron nuclear dynamics (SLEND) method to H + + (H 2O) 1-6 at E Lab = 100 keV. These systems are computationally tractable prototypes to simulate water radiolysis reactions—i.e. the PCT processes that generate the DNA-damaging species against cancerous cells. To capture incipient bulk-water effects, ten (H 2O) 1-6 isomers are considered, ranging from quasi-planar/multiplanar (H 2O) 1-6 to “smallest-drop” prism and cage (H 2O) 6 structures. SLEND is a time-dependent, variational, non-adiabatic and direct method that adopts a nuclear classical-mechanics description and an electronic single-determinantal wavefunction in the Thouless representation. Short-time SLEND/6-31G* ( n = 1–6) and /6-31G** (n = 1–5) simulations render cluster-to-projectile 1-electron-transfer (1-ET) total integral cross sections (ICSs) and 1-ET probabilities. In absolute quantitative terms, SLEND/6-31G* 1-ET ICS compares satisfactorily with alternative experimental and theoretical results only available for n = 1 and exhibits almost the same accuracy of the best alternative theoretical result. SLEND/6-31G** overestimates 1-ET ICS for n = 1, but a comparable overestimation is also observed with another theoretical method. An investigation on H + + H indicates that electron direct ionization (DI) becomes significant with the large virtual-space quasi-continuum in large basis sets; thus, SLEND/6-31G** 1-ET ICS is overestimated by DI contributions. The solution to this problem is discussed. In relative quantitative terms, both SLEND/6-31* and /6-31G** 1-ET ICSs precisely fit into physically justified scaling formulae as a function of the cluster size; this indicates SLEND’s suitability for predicting properties of water clusters with varying size. Long-time SLEND/6-31G* ( n = 1–4) simulations predict the formation of the DNA-damaging radicals H, OH, O and H 3O. While “smallest-drop” isomers are included, no early manifestations of bulk water PCT properties are observed and simulations with larger water clusters will be needed to capture those effects. This study is the largest SLEND investigation on water radiolysis to date.

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          Stability conditions and nuclear rotations in the Hartree-Fock theory

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            Perspective: How good is DFT for water?

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              Structures of Cage, Prism, and Book Isomers of Water Hexamer from Broadband Rotational Spectroscopy

              Theory predicts the water hexamer to be the smallest water cluster with a three-dimensional hydrogen-bonding network as its minimum energy structure. There are several possible low-energy isomers, and calculations with different methods and basis sets assign them different relative stabilities. Previous experimental work has provided evidence for the cage, book, and cyclic isomers, but no experiment has identified multiple coexisting structures. Here, we report that broadband rotational spectroscopy in a pulsed supersonic expansion unambiguously identifies all three isomers; we determined their oxygen framework structures by means of oxygen-18-substituted water (H(2)(18)O). Relative isomer populations at different expansion conditions establish that the cage isomer is the minimum energy structure. Rotational spectra consistent with predicted heptamer and nonamer structures have also been identified.
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                Author and article information

                Contributors
                Role: Editor
                Journal
                PLoS One
                PLoS ONE
                plos
                plosone
                PLoS ONE
                Public Library of Science (San Francisco, CA USA )
                1932-6203
                4 April 2017
                2017
                : 12
                : 4
                : e0174456
                Affiliations
                [001]Department of Chemistry and Biochemistry, Texas Tech University, Lubbock, Texas, United States of America
                Syddansk Universitet, DENMARK
                Author notes

                Competing Interests: The authors have declared that no competing interests exist.

                • Conceptualization: JAM.

                • Data curation: AJP EST JAM.

                • Formal analysis: AJP CS EST JAM.

                • Funding acquisition: JAM.

                • Investigation: AJP CS EST JAM.

                • Methodology: AJP JAM.

                • Project administration: JAM.

                • Resources: JAM.

                • Software: AJP EST JAM.

                • Supervision: JAM.

                • Validation: AJP CS EST.

                • Visualization: AJP EST.

                • Writing – original draft: AJP JAM.

                • Writing – review & editing: JAM.

                [¤a]

                Current address: Department of Chemistry and Biochemistry, Lipscomb University, Nashville, Tennessee

                [¤b]

                Current address: Department of Chemistry and Industrial Hygiene, University of North Alabama, Florence, Alabama, United States of America

                Article
                PONE-D-16-42898
                10.1371/journal.pone.0174456
                5380356
                28376128
                dbc8ad1d-5288-482a-90af-3790d3bf7f37
                © 2017 Privett et al

                This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

                History
                : 31 October 2016
                : 9 March 2017
                Page count
                Figures: 7, Tables: 3, Pages: 22
                Funding
                Funded by: funder-id http://dx.doi.org/10.13039/100004917, Cancer Prevention and Research Institute of Texas;
                Award ID: RP140478
                Award Recipient :
                Funded by: Scientists without Borders Fellowship, CNpQ (Br)
                Award ID: N/A
                Award Recipient :
                This work was supported by 1) Science without Borders Fellowship Program of the National Council for Scientific and Technological Development of Brazil, to EST, http://www.cienciasemfronteiras.gov.br/web/csf-eng/faq: 2) Cancer Prevention and Research Institute of Texas to JAM, grant: RP140478 http://www.cprit.state.tx.us/. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.
                Categories
                Research Article
                Physical Sciences
                Chemistry
                Chemical Compounds
                Isomers
                Physical Sciences
                Chemistry
                Stereochemistry
                Isomerism
                Isomers
                Engineering and Technology
                Equipment
                Optical Equipment
                Prisms
                Biology and life sciences
                Genetics
                DNA
                DNA damage
                Biology and life sciences
                Biochemistry
                Nucleic acids
                DNA
                DNA damage
                Engineering and Technology
                Technology Development
                Prototypes
                Physical Sciences
                Physics
                Condensed Matter Physics
                Electron Density
                Research and Analysis Methods
                Simulation and Modeling
                Physical Sciences
                Physics
                Nuclear Physics
                Nucleons
                Protons
                Medicine and Health Sciences
                Oncology
                Cancer Treatment
                Radiation Therapy
                Medicine and Health Sciences
                Clinical Medicine
                Clinical Oncology
                Radiation Therapy
                Medicine and Health Sciences
                Oncology
                Clinical Oncology
                Radiation Therapy
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                All relevant data are within the paper.

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