Journal ID (nlm-ta): PLoS One
Journal ID (iso-abbrev): PLoS ONE
Journal ID (publisher-id): plos
Journal ID (pmc): plosone
Title:
PLoS ONE
Publisher:
Public Library of Science
(San Francisco, CA USA
)
ISSN
(Electronic):
1932-6203
Publication date
(Electronic):
21
June
2016
Publication date Collection: 2016
Volume: 11
Issue: 6
Electronic Location Identifier: e0156543
Affiliations
[1
]Genome Center, One Shields Ave., University of California Davis, Davis, CA, 95616,
United States of America
[2
]Microbiology Graduate Group, One Shields Ave., University of California Davis, Davis,
CA, 95616, United States of America
[3
]Department of Biomedical Engineering, One Shields Ave., University of California Davis,
Davis, CA, 95616, United States of America
[4
]Proteome Software, 1340 SW Bertha Blvd., Portland, Oregon, United States of America
[5
]California Department of Food and Agriculture, 1220 N St., Sacramento, CA, 95814,
United States of America
[6
]William’s College, 880 Main St., Williamstown, MA, 01267, United States of America
[7
]Department of Physiology and Membrane Biology, One Shields Ave., University of California
Davis, Davis, CA, 95616, United States of America
Max F. Perutz Laboratories, AUSTRIA
Author notes
Competing Interests: PMS is currently an employee of Proteome Software, Portland, Oregon, USA. However,
this employment began after completion of work on this manuscript. The authors declare
that no competing interests exist. This does not alter the authors’ adherence to PLOS
ONE policies on sharing data and materials.
Conceived and designed the experiments: EAB MTF. Performed the experiments: EAB AIY
PMS TK TW RE VY. Analyzed the data: EAB AIY MTF PMS TK KSYS VY. Contributed reagents/materials/analysis
tools: MTF RE TK VY. Wrote the paper: EAB MTF VY TK AIY RE PMS.
Article
Publisher ID:
PONE-D-16-11946
DOI: 10.1371/journal.pone.0156543
PMC ID: 4915679
PubMed ID: 27327432
SO-VID: dc40e7ab-7e69-4a76-b378-f4c78df99953
Copyright © © 2016 Becker et al
License:
This is an open access article distributed under the terms of the
Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided
the original author and source are credited.
Funded by: funder-id http://dx.doi.org/10.13039/100000156, Division of Emerging Frontiers;
Award ID: EF0949453
Award Recipient
:
Marc T. Facciotti
Funded by: funder-id http://dx.doi.org/10.13039/100007707, University of California, Davis;
Award ID: Bridge Funds
Award Recipient
:
Marc T. Facciotti
Funding for this work came from the National Science Foundation [EF0949453] and departmental
and bridge funds to MTF. The funder provided support in the form of salaries for author
PMS, AIY, EAB and MTF but did not have any additional role in the study design, data
collection and analysis, decision to publish, or preparation of the manuscript. The
specific roles of these authors are articulated in the ‘author contributions’ section.
Subject:
Research Article
Subject:
Research and Analysis Methods
Subject:
Database and Informatics Methods
Subject:
Biological Databases
Subject:
Sequence Databases
Subject:
Biology and Life Sciences
Subject:
Molecular Biology
Subject:
Molecular Biology Techniques
Subject:
Sequencing Techniques
Subject:
Sequence Analysis
Subject:
Sequence Databases
Subject:
Research and Analysis Methods
Subject:
Molecular Biology Techniques
Subject:
Sequencing Techniques
Subject:
Sequence Analysis
Subject:
Sequence Databases
Subject:
Biology and Life Sciences
Subject:
Molecular Biology
Subject:
Molecular Biology Techniques
Subject:
Molecular Biology Assays and Analysis Techniques
Subject:
Phylogenetic Analysis
Subject:
Research and Analysis Methods
Subject:
Molecular Biology Techniques
Subject:
Molecular Biology Assays and Analysis Techniques
Subject:
Phylogenetic Analysis
Subject:
Biology and Life Sciences
Subject:
Molecular Biology
Subject:
Molecular Biology Techniques
Subject:
Sequencing Techniques
Subject:
Sequence Analysis
Subject:
Sequence Alignment
Subject:
Research and Analysis Methods
Subject:
Molecular Biology Techniques
Subject:
Sequencing Techniques
Subject:
Sequence Analysis
Subject:
Sequence Alignment
Subject:
Research and Analysis Methods
Subject:
Database and Informatics Methods
Subject:
Database Searching
Subject:
Biology and Life Sciences
Subject:
Evolutionary Biology
Subject:
Evolutionary Systematics
Subject:
Phylogenetics
Subject:
Biology and Life Sciences
Subject:
Taxonomy
Subject:
Evolutionary Systematics
Subject:
Phylogenetics
Subject:
Computer and Information Sciences
Subject:
Data Management
Subject:
Taxonomy
Subject:
Evolutionary Systematics
Subject:
Phylogenetics
Subject:
Research and Analysis Methods
Subject:
Database and Informatics Methods
Subject:
Biological Databases
Subject:
Genomic Databases
Subject:
Biology and Life Sciences
Subject:
Computational Biology
Subject:
Genome Analysis
Subject:
Genomic Databases
Subject:
Biology and Life Sciences
Subject:
Genetics
Subject:
Genomics
Subject:
Genome Analysis
Subject:
Genomic Databases
Subject:
Research and Analysis Methods
Subject:
Computational Techniques
Subject:
Split-Decomposition Method
Subject:
Multiple Alignment Calculation
Subject:
Physical Sciences
Subject:
Chemistry
Subject:
Chemical Compounds
Subject:
Organic Compounds
Subject:
Amino Acids
Subject:
Basic Amino Acids
Subject:
Lysine
Subject:
Physical Sciences
Subject:
Chemistry
Subject:
Organic Chemistry
Subject:
Organic Compounds
Subject:
Amino Acids
Subject:
Basic Amino Acids
Subject:
Lysine
Subject:
Biology and Life Sciences
Subject:
Biochemistry
Subject:
Proteins
Subject:
Amino Acids
Subject:
Basic Amino Acids
Subject:
Lysine
