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      Compressed Sensing for the Fast Computation of Matrices: Application to Molecular Vibrations

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      , ,
      ACS Central Science
      American Chemical Society

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          Abstract

          This article presents a new method to compute matrices from numerical simulations based on the ideas of sparse sampling and compressed sensing. The method is useful for problems where the determination of the entries of a matrix constitutes the computational bottleneck. We apply this new method to an important problem in computational chemistry: the determination of molecular vibrations from electronic structure calculations, where our results show that the overall scaling of the procedure can be improved in some cases. Moreover, our method provides a general framework for bootstrapping cheap low-accuracy calculations in order to reduce the required number of expensive high-accuracy calculations, resulting in a significant 3× speed-up in actual calculations.

          Abstract

          We present a method for efficiently computing matrices in numerical simulations based on the ideas of compressed sensing, and apply it to the determination of molecular vibrations from quantum calculations.

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          Most cited references13

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          Faster STORM using compressed sensing.

          In super-resolution microscopy methods based on single-molecule switching, the rate of accumulating single-molecule activation events often limits the time resolution. Here we developed a sparse-signal recovery technique using compressed sensing to analyze images with highly overlapping fluorescent spots. This method allows an activated fluorophore density an order of magnitude higher than what conventional single-molecule fitting methods can handle. Using this method, we demonstrated imaging microtubule dynamics in living cells with a time resolution of 3 s.
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            Is Open Access

            Quantum state tomography via compressed sensing

            We establish methods for quantum state tomography based on compressed sensing. These methods are specialized for quantum states that are fairly pure, and they offer a significant performance improvement on large quantum systems. In particular, they are able to reconstruct an unknown density matrix of dimension d and rank r using O(rd log^2 d) measurement settings, compared to standard methods that require d^2 settings. Our methods have several features that make them amenable to experimental implementation: they require only simple Pauli measurements, use fast convex optimization, are stable against noise, and can be applied to states that are only approximately low-rank. The acquired data can be used to certify that the state is indeed close to pure, so no a priori assumptions are needed. We present both theoretical bounds and numerical simulations.
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              Is Open Access

              Efficient measurement of quantum dynamics via compressive sensing

              The resources required to characterise the dynamics of engineered quantum systems-such as quantum computers and quantum sensors-grow exponentially with system size. Here we adapt techniques from compressive sensing to exponentially reduce the experimental configurations required for quantum process tomography. Our method is applicable to dynamical processes that are known to be nearly-sparse in a certain basis and it can be implemented using only single-body preparations and measurements. We perform efficient, high-fidelity estimation of process matrices on an experiment attempting to implement a photonic two-qubit logic-gate. The data base is obtained under various decoherence strengths. We find that our technique is both accurate and noise robust, thus removing a key roadblock to the development and scaling of quantum technologies.
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                Author and article information

                Journal
                ACS Cent Sci
                ACS Cent Sci
                oc
                acscii
                ACS Central Science
                American Chemical Society
                2374-7943
                2374-7951
                23 March 2015
                25 March 2015
                : 1
                : 1
                : 24-32
                Affiliations
                [1]Department of Chemistry and Chemical Biology, Harvard University , 12 Oxford Street, Cambridge, Massachusetts 02138, United States
                Author notes
                Article
                10.1021/oc5000404
                4827532
                27162943
                dcf239ea-d526-4784-8809-bd419a0ef8aa
                Copyright © 2015 American Chemical Society

                This is an open access article published under an ACS AuthorChoice License, which permits copying and redistribution of the article or any adaptations for non-commercial purposes.

                History
                : 22 December 2014
                Categories
                Research Article
                Custom metadata
                oc5000404
                oc-2014-000404

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