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      On the stability and dynamics of stochastic spiking neuron models: Nonlinear Hawkes process and point process GLMs

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      1 , 2 , 3 , 1 , 4 , 5 , *
      PLoS Computational Biology
      Public Library of Science

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          There is no author summary for this article yet. Authors can add summaries to their articles on ScienceOpen to make them more accessible to a non-specialist audience.

          Abstract

          Point process generalized linear models (PP-GLMs) provide an important statistical framework for modeling spiking activity in single-neurons and neuronal networks. Stochastic stability is essential when sampling from these models, as done in computational neuroscience to analyze statistical properties of neuronal dynamics and in neuro-engineering to implement closed-loop applications. Here we show, however, that despite passing common goodness-of-fit tests, PP-GLMs estimated from data are often unstable, leading to divergent firing rates. The inclusion of absolute refractory periods is not a satisfactory solution since the activity then typically settles into unphysiological rates. To address these issues, we derive a framework for determining the existence and stability of fixed points of the expected conditional intensity function (CIF) for general PP-GLMs. Specifically, in nonlinear Hawkes PP-GLMs, the CIF is expressed as a function of the previous spike history and exogenous inputs. We use a mean-field quasi-renewal (QR) approximation that decomposes spike history effects into the contribution of the last spike and an average of the CIF over all spike histories prior to the last spike. Fixed points for stationary rates are derived as self-consistent solutions of integral equations. Bifurcation analysis and the number of fixed points predict that the original models can show stable, divergent, and metastable (fragile) dynamics. For fragile models, fluctuations of the single-neuron dynamics predict expected divergence times after which rates approach unphysiologically high values. This metric can be used to estimate the probability of rates to remain physiological for given time periods, e.g., for simulation purposes. We demonstrate the use of the stability framework using simulated single-neuron examples and neurophysiological recordings. Finally, we show how to adapt PP-GLM estimation procedures to guarantee model stability. Overall, our results provide a stability framework for data-driven PP-GLMs and shed new light on the stochastic dynamics of state-of-the-art statistical models of neuronal spiking activity.

          Author summary

          Earthquakes, gene regulatory elements, financial transactions, and action potentials produced by nerve cells are examples of sequences of discrete events in space or time. In many cases, such events do not appear independently of each other. Instead, the occurrence of one event changes the rate of upcoming events (e.g, aftershocks following an earthquake). The nonlinear Hawkes process is a statistical model that captures these complex dependencies. Unfortunately, for a given model, it is hard to predict whether stochastic samples will produce an event pattern consistent with observations. In particular, with positive feedback loops, the process might diverge and yield unrealistically high event rates. Here, we show that an approximation to the mathematical model predicts dynamical properties, in particular, whether the model will exhibit stable and finite rates. In the context of neurophysiology, we find that models estimated from experimental data often tend to show metastability or even unstable dynamics. Our framework can be used to add constraints to data-driven estimation procedures to find the optimal model with realistic event rates and help to build more robust models of single-cell spiking dynamics. It is a first step towards studying the stability of large-scale nonlinear spiking neural network models estimated from data.

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          Most cited references47

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          Spatio-temporal correlations and visual signalling in a complete neuronal population.

          Statistical dependencies in the responses of sensory neurons govern both the amount of stimulus information conveyed and the means by which downstream neurons can extract it. Although a variety of measurements indicate the existence of such dependencies, their origin and importance for neural coding are poorly understood. Here we analyse the functional significance of correlated firing in a complete population of macaque parasol retinal ganglion cells using a model of multi-neuron spike responses. The model, with parameters fit directly to physiological data, simultaneously captures both the stimulus dependence and detailed spatio-temporal correlations in population responses, and provides two insights into the structure of the neural code. First, neural encoding at the population level is less noisy than one would expect from the variability of individual neurons: spike times are more precise, and can be predicted more accurately when the spiking of neighbouring neurons is taken into account. Second, correlations provide additional sensory information: optimal, model-based decoding that exploits the response correlation structure extracts 20% more information about the visual scene than decoding under the assumption of independence, and preserves 40% more visual information than optimal linear decoding. This model-based approach reveals the role of correlated activity in the retinal coding of visual stimuli, and provides a general framework for understanding the importance of correlated activity in populations of neurons.
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            Variability, compensation and homeostasis in neuron and network function.

            Neurons in most animals live a very long time relative to the half-lives of all of the proteins that govern excitability and synaptic transmission. Consequently, homeostatic mechanisms are necessary to ensure stable neuronal and network function over an animal's lifetime. To understand how these homeostatic mechanisms might function, it is crucial to understand how tightly regulated synaptic and intrinsic properties must be for adequate network performance, and the extent to which compensatory mechanisms allow for multiple solutions to the production of similar behaviour. Here, we use examples from theoretical and experimental studies of invertebrates and vertebrates to explore several issues relevant to understanding the precision of tuning of synaptic and intrinsic currents for the operation of functional neuronal circuits.
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              It is often assumed that cellular and synaptic properties need to be regulated to specific values to allow a neuronal network to function properly. To determine how tightly neuronal properties and synaptic strengths need to be tuned to produce a given network output, we simulated more than 20 million versions of a three-cell model of the pyloric network of the crustacean stomatogastric ganglion using different combinations of synapse strengths and neuron properties. We found that virtually indistinguishable network activity can arise from widely disparate sets of underlying mechanisms, suggesting that there could be considerable animal-to-animal variability in many of the parameters that control network activity, and that many different combinations of synaptic strengths and intrinsic membrane properties can be consistent with appropriate network performance.
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                Author and article information

                Contributors
                Role: Editor
                Journal
                PLoS Comput Biol
                PLoS Comput. Biol
                plos
                ploscomp
                PLoS Computational Biology
                Public Library of Science (San Francisco, CA USA )
                1553-734X
                1553-7358
                February 2017
                24 February 2017
                : 13
                : 2
                : e1005390
                Affiliations
                [1 ]Department of Neuroscience, Brown University, Providence, Rhode Island, United States of America
                [2 ]School of Computer and Communication Sciences and School of Life Sciences, Brain Mind Institute, École polytechnique fédérale de Lausanne (EPFL), Lausanne, Switzerland
                [3 ]Institute for Zoology, Faculty of Mathematics and Natural Sciences, University of Cologne, Cologne, Germany
                [4 ]Institute for Brain Science, Brown University, Providence, Rhode Island, United States of America
                [5 ]Center for Neurorestoration & Neurotechnology, U. S. Department of Veterans Affairs, Providence, Rhode Island, United States of America
                Duke University, UNITED STATES
                Author notes

                The authors have declared that no competing interests exist.

                • Conceptualization: FG MD WT.

                • Data curation: FG.

                • Formal analysis: FG MD.

                • Funding acquisition: WT.

                • Investigation: FG MD.

                • Methodology: FG MD.

                • Project administration: WT.

                • Resources: WT.

                • Software: FG MD.

                • Supervision: WT.

                • Visualization: FG.

                • Writing – original draft: FG MD.

                • Writing – review & editing: FG MD WT.

                Author information
                http://orcid.org/0000-0002-1733-3229
                http://orcid.org/0000-0002-2775-2611
                Article
                PCOMPBIOL-D-16-01090
                10.1371/journal.pcbi.1005390
                5325182
                28234899
                dd54be66-33a2-4558-8c1d-933481e6d12a

                This is an open access article, free of all copyright, and may be freely reproduced, distributed, transmitted, modified, built upon, or otherwise used by anyone for any lawful purpose. The work is made available under the Creative Commons CC0 public domain dedication.

                History
                : 6 July 2016
                : 28 January 2017
                Page count
                Figures: 10, Tables: 0, Pages: 31
                Funding
                Funded by: funder-id http://dx.doi.org/10.13039/100000065, National Institute of Neurological Disorders and Stroke;
                Award ID: R01NS079533
                Award Recipient :
                Funded by: funder-id http://dx.doi.org/10.13039/100000738, U.S. Department of Veterans Affairs;
                Award ID: I01RX000668
                Award Recipient :
                Funded by: funder-id http://dx.doi.org/10.13039/100006418, Brown University;
                Award ID: Pablo J. Salame ‘88 Goldman Sachs endowed Assistant Professorship of Computational Neuroscience
                Award Recipient :
                Funded by: funder-id http://dx.doi.org/10.13039/501100001711, Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung;
                Award ID: P2ELP3-155278
                Award Recipient :
                Funded by: funder-id http://dx.doi.org/10.13039/501100001711, Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung;
                Award ID: 200020_147200
                We acknowledge support from the National Institute of Neurological Disorders and Stroke (NINDS), grant R01NS079533 (WT); the U.S. Department of Veterans Affairs, Merit Review Award I01RX000668 (WT); the Pablo J. Salame ‘88 Goldman Sachs endowed Assistant Professorship of Computational Neuroscience at Brown University (WT); the Swiss National Science Foundation, grant no. P2ELP3-155278 (FG) and grant no. 200020_147200 (MD); and the European Union Seventh Framework Program (FP7) under grant agreement no. 604102, Human Brain Project (MD). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.
                Categories
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                Biology and Life Sciences
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                Electrophysiology
                Membrane Potential
                Action Potentials
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                Membrane Potential
                Action Potentials
                Biology and Life Sciences
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                Neurophysiology
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                All relevant data files are available from the Brown Digital Repository: DOI: 10.7301/Z0K0726H.

                Quantitative & Systems biology
                Quantitative & Systems biology

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