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      Exploratory graph analysis: A new approach for estimating the number of dimensions in psychological research

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      PLoS ONE
      Public Library of Science

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          Abstract

          The estimation of the correct number of dimensions is a long-standing problem in psychometrics. Several methods have been proposed, such as parallel analysis (PA), Kaiser-Guttman’s eigenvalue-greater-than-one rule, multiple average partial procedure (MAP), the maximum-likelihood approaches that use fit indexes as BIC and EBIC and the less used and studied approach called very simple structure (VSS). In the present paper a new approach to estimate the number of dimensions will be introduced and compared via simulation to the traditional techniques pointed above. The approach proposed in the current paper is called exploratory graph analysis (EGA), since it is based on the graphical lasso with the regularization parameter specified using EBIC. The number of dimensions is verified using the walktrap, a random walk algorithm used to identify communities in networks. In total, 32,000 data sets were simulated to fit known factor structures, with the data sets varying across different criteria: number of factors (2 and 4), number of items (5 and 10), sample size (100, 500, 1000 and 5000) and correlation between factors (orthogonal, .20, .50 and .70), resulting in 64 different conditions. For each condition, 500 data sets were simulated using lavaan. The result shows that the EGA performs comparable to parallel analysis, EBIC, eBIC and to Kaiser-Guttman rule in a number of situations, especially when the number of factors was two. However, EGA was the only technique able to correctly estimate the number of dimensions in the four-factor structure when the correlation between factors were .7, showing an accuracy of 100% for a sample size of 5,000 observations. Finally, the EGA was used to estimate the number of factors in a real dataset, in order to compare its performance with the other six techniques tested in the simulation study.

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          Sparse inverse covariance estimation with the graphical lasso.

          We consider the problem of estimating sparse graphs by a lasso penalty applied to the inverse covariance matrix. Using a coordinate descent procedure for the lasso, we develop a simple algorithm--the graphical lasso--that is remarkably fast: It solves a 1000-node problem ( approximately 500,000 parameters) in at most a minute and is 30-4000 times faster than competing methods. It also provides a conceptual link between the exact problem and the approximation suggested by Meinshausen and Bühlmann (2006). We illustrate the method on some cell-signaling data from proteomics.
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            Determining the number of components from the matrix of partial correlations

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              Extended Bayesian information criteria for model selection with large model spaces

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                Author and article information

                Contributors
                Role: Editor
                Journal
                PLoS One
                PLoS ONE
                plos
                plosone
                PLoS ONE
                Public Library of Science (San Francisco, CA USA )
                1932-6203
                8 June 2017
                2017
                : 12
                : 6
                : e0174035
                Affiliations
                [1 ]Department of Psychology, University of Virginia, Charlottesville, VA, United States of America
                [2 ]Graduate School of Psychology, Universidade Salgado de Oliveira, Rio de Janeiro, Brasil
                [3 ]University of Amsterdam, Amsterdam, Netherlands
                University of Vienna, AUSTRIA
                Author notes

                Competing Interests: The authors have declared that no competing interests exist.

                • Conceptualization: HFG SE.

                • Formal analysis: HFG.

                • Methodology: HFG.

                • Software: HFG.

                • Validation: HFG.

                • Visualization: HFG.

                • Writing – original draft: HFG SE.

                • Writing – review & editing: HFG SE.

                Article
                PONE-D-16-13809
                10.1371/journal.pone.0174035
                5465941
                28594839
                dd7d0336-2627-4007-bb31-4dfb9e388f22
                © 2017 Golino, Epskamp

                This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

                History
                : 5 April 2016
                : 2 March 2017
                Page count
                Figures: 9, Tables: 4, Pages: 26
                Funding
                The authors received no specific funding for this work.
                Categories
                Research Article
                Physical Sciences
                Mathematics
                Algebra
                Linear Algebra
                Eigenvalues
                Research and Analysis Methods
                Simulation and Modeling
                Computer and Information Sciences
                Network Analysis
                Biology and Life Sciences
                Psychology
                Psychometrics
                Social Sciences
                Psychology
                Psychometrics
                Research and Analysis Methods
                Mathematical and Statistical Techniques
                Statistical Methods
                Factor Analysis
                Physical Sciences
                Mathematics
                Statistics (Mathematics)
                Statistical Methods
                Factor Analysis
                Physical Sciences
                Mathematics
                Statistics (Mathematics)
                Confidence Intervals
                Biology and Life Sciences
                Neuroscience
                Cognitive Science
                Cognitive Psychology
                Reasoning
                Biology and Life Sciences
                Psychology
                Cognitive Psychology
                Reasoning
                Social Sciences
                Psychology
                Cognitive Psychology
                Reasoning
                Biology and Life Sciences
                Psychology
                Social Sciences
                Psychology
                Custom metadata
                All relevant data are within the paper and its Supporting Information files, specially the R code used in the manuscript. The real dataset used in the last section are available into figshare: https://figshare.com/articles/TDRI_dataset_csv/3142321.

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