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      The balancing act of Nipponites mirabilis (Nostoceratidae, Ammonoidea): Managing hydrostatics throughout a complex ontogeny

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      PLoS ONE
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          Abstract

          Nipponites is a heteromorph ammonoid with a complex and unique morphology that obscures its mode of life and ethology. The seemingly aberrant shell of this Late Cretaceous nostoceratid seems deleterious. However, hydrostatic simulations suggest that this morphology confers several advantages for exploiting a quasi-planktic mode of life. Virtual, 3D models of Nipponites mirabilis were used to compute various hydrostatic properties through 14 ontogenetic stages. At each stage, Nipponites had the capacity for neutral buoyancy and was not restricted to the seafloor. Throughout ontogeny, horizontally facing to upwardly facing soft body orientations were preferred at rest. These orientations were aided by the obliquity of the shell’s ribs, which denote former positions of the aperture that were tilted from the growth direction of the shell. Static orientations were somewhat fixed, inferred by stability values that are slightly higher than extant Nautilus. The initial open-whorled, planispiral phase is well suited to horizontal backwards movement with little rocking. Nipponites then deviated from this bilaterally symmetric coiling pattern with a series of alternating U-shaped bends in the shell. This modification allows for proficient rotation about the vertical axis, while possibly maintaining the option for horizontal backwards movement by redirecting its hyponome. These particular hydrostatic properties likely result in a tradeoff between hydrodynamic streamlining, suggesting that Nipponites assumed a low energy lifestyle of slowly pirouetting in search for planktic prey. Each computed hydrostatic property influences the others in some way, suggesting that Nipponites maintained a delicate hydrostatic balancing act throughout its ontogeny in order to facilitate this mode of life.

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          Calculation and simulation of ammonoid hydrostatics

          The buoyancy, stability, and orientation of a shelled cephalopod in water are the predictable products of shell geometry, body chamber length, and such physical parameters as shell, tissue, and water densities. Given such physical characteristics as shell geometry, shell, tissue, and water densities, and shell thickness, the hydrostatic characteristics of planispiral shelled cephalopods, including orientation, centers of mass and buoyancy, stability, and neutrally buoyant body chamber length, can be calculated and simulated using microcomputer-based techniques. Individual variables such as geometry, body chamber length, and shell thickness are linked in a calculable manner to orientation, neutral buoyancy, and stability. LivingNautilusprovides a means of testing the model and for making hydrostatic comparisons between ammonoids and nautiloids. The close agreement between calculated versus observed body chamber lengths in five species of Mississippian ammonoids shows that neutral buoyancy, and (with one exception)Nautilus-like orientations, were at least feasible for these species.
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            Reconstruction and analysis of a genome-scale metabolic model of the oleaginous fungus Mortierella alpina

            Background Mortierella alpina is an oleaginous fungus used in the industrial scale production of arachidonic acid (ARA). In order to investigate the metabolic characteristics at a systems level and to explore potential strategies for enhanced lipid production, a genome-scale metabolic model of M. alpina was reconstructed. Results This model included 1106 genes, 1854 reactions and 1732 metabolites. On minimal growth medium, 86 genes were identified as essential, whereas 49 essential genes were identified on yeast extract medium. A series of sequential desaturase and elongase catalysed steps are involved in the synthesis of polyunsaturated fatty acids (PUFAs) from acetyl-CoA precursors, with concomitant NADPH consumption, and these steps were investigated in this study. Oxygen is known to affect the degree of unsaturation of PUFAs, and robustness analysis determined that an oxygen uptake rate of 2.0 mmol gDW−1 h−1 was optimal for ARA accumulation. The flux of 53 reactions involving NADPH was significantly altered at different ARA levels. Of these, malic enzyme (ME) was confirmed as a key component in ARA production and NADPH generation. When using minimization of metabolic adjustment, a knock-out of ME led to a 38.28% decrease in ARA production. Conclusions The simulation results confirmed the model as a useful tool for future research on the metabolism of PUFAs. Electronic supplementary material The online version of this article (doi:10.1186/s12918-014-0137-8) contains supplementary material, which is available to authorized users.
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              Ammonoid Life and Habitat

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                Author and article information

                Contributors
                Role: ConceptualizationRole: Data curationRole: Formal analysisRole: Funding acquisitionRole: InvestigationRole: MethodologyRole: Project administrationRole: ResourcesRole: SoftwareRole: SupervisionRole: ValidationRole: VisualizationRole: Writing – original draftRole: Writing – review & editing
                Role: Data curationRole: Funding acquisitionRole: ResourcesRole: Writing – review & editing
                Role: Data curationRole: Funding acquisitionRole: ResourcesRole: Writing – review & editing
                Role: Editor
                Journal
                PLoS One
                PLoS ONE
                plos
                plosone
                PLoS ONE
                Public Library of Science (San Francisco, CA USA )
                1932-6203
                6 August 2020
                2020
                : 15
                : 8
                : e0235180
                Affiliations
                [1 ] Department of Geology and Geophysics, University of Utah, Salt Lake City, Utah, United States of America
                [2 ] Department of Biological Sciences, University of Tokyo, Tokyo, Japan
                [3 ] Hokkaido University, Shuma-no-kai, Hokkaido, Japan
                University of California, UNITED STATES
                Author notes

                Competing Interests: The authors have declared that no competing interests exist.

                Author information
                http://orcid.org/0000-0002-6609-8544
                Article
                PONE-D-20-17354
                10.1371/journal.pone.0235180
                7410299
                32760063
                de69b117-c129-4c25-93c2-68cedd9fc9d4
                © 2020 Peterman et al

                This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

                History
                : 7 June 2020
                : 22 July 2020
                Page count
                Figures: 9, Tables: 2, Pages: 23
                Funding
                Funded by: funder-id http://dx.doi.org/10.13039/100000001, National Science Foundation;
                Award ID: 1952756
                Award Recipient :
                Funded by: funder-id http://dx.doi.org/10.13039/501100001691, Japan Society for the Promotion of Science;
                Award ID: 18J21859
                Award Recipient :
                DP thanks the National Science Foundation (NSF-EAR-PF, #1952756) for some research materials and publication fees. SI and TM thank the Masason Foundation, the ANRI fellowship, and the JSPS (Japan Society for the Promotion of Science) KAKENHI (#18J21859) for funding a portion of this research. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.
                Categories
                Research Article
                Physical Sciences
                Physics
                Classical Mechanics
                Thrust
                Biology and Life Sciences
                Developmental Biology
                Morphogenesis
                Physical Sciences
                Physics
                Condensed Matter Physics
                Buoyancy
                Biology and Life Sciences
                Organisms
                Eukaryota
                Animals
                Invertebrates
                Molluscs
                Cephalopods
                Biology and Life Sciences
                Zoology
                Animals
                Invertebrates
                Molluscs
                Cephalopods
                Physical Sciences
                Materials Science
                Material Properties
                Density
                Physical Sciences
                Materials Science
                Materials Physics
                Density
                Physical Sciences
                Physics
                Materials Physics
                Density
                Biology and Life Sciences
                Biomechanics
                Musculoskeletal Mechanics
                Biology and Life Sciences
                Physiology
                Muscle Physiology
                Musculoskeletal Mechanics
                Physical Sciences
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                Classical Mechanics
                Continuum Mechanics
                Fluid Mechanics
                Fluid Dynamics
                Hydrodynamics
                Physical Sciences
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