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      Different on the abundance of Pampus argenteus in Persian Gulf exceeding in variety comparing to Gulf of Oman

      research-article
      a , a , b
      Mitochondrial DNA. Part B, Resources
      Taylor & Francis
      Pampus argenteus, cytochrome b, D-loop, Persian Gulf, Gulf of Oman

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          Abstract

          Silver pomfret fish (Stromateidae) is a family of Perciformes order. One species of this family is Pampus argenteus known as silver pomfret and lives in different parts of the Persian Gulf and Gulf of Oman. Therefore, the genetic relationship between its populations is so important. In this study, eight samples of Pampus argenteus were collected from four locations involved: Emam Khomeyni, Bushehr and Bandar Abbas in Persian Gulf and Chabahar in Gulf of Oman. Cytochrome b gene and D-loop region of mitochondrial DNA on these samples are analyzed. These genes are carried out using PCR with specific mtDNA primers and sequenced. Then, the evolutionary history was inferred by using the maximum-likelihood method. Evolutionary analyses were conducted in MEGA7. According to the phylogenetic trees, with translocations in Persian Gulf to Gulf of Oman, similarity decreases slowly. Chabahar1 sample in phylogenetic tree of cytochrome b is phylogenetically near China Sea samples. The reason may be migration from ocean to gulf throughout the centuries and Chabahar is in Gulf of Oman and locationally near the Arabian Sea and Indian Ocean. In D-loop region, results are similar to cytochrome b excepting one sample (Emam Khomeyni1). D-Loop in samples shows modification more than cytochrome b for the reason absence of protein product.

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          Most cited references5

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          MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets.

          We present the latest version of the Molecular Evolutionary Genetics Analysis (Mega) software, which contains many sophisticated methods and tools for phylogenomics and phylomedicine. In this major upgrade, Mega has been optimized for use on 64-bit computing systems for analyzing larger datasets. Researchers can now explore and analyze tens of thousands of sequences in Mega The new version also provides an advanced wizard for building timetrees and includes a new functionality to automatically predict gene duplication events in gene family trees. The 64-bit Mega is made available in two interfaces: graphical and command line. The graphical user interface (GUI) is a native Microsoft Windows application that can also be used on Mac OS X. The command line Mega is available as native applications for Windows, Linux, and Mac OS X. They are intended for use in high-throughput and scripted analysis. Both versions are available from www.megasoftware.net free of charge.
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            Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees.

            K Tamura, M Nei (1993)
            Examining the pattern of nucleotide substitution for the control region of mitochondrial DNA (mtDNA) in humans and chimpanzees, we developed a new mathematical method for estimating the number of transitional and transversional substitutions per site, as well as the total number of nucleotide substitutions. In this method, excess transitions, unequal nucleotide frequencies, and variation of substitution rate among different sites are all taken into account. Application of this method to human and chimpanzee data suggested that the transition/transversion ratio for the entire control region was approximately 15 and nearly the same for the two species. The 95% confidence interval of the age of the common ancestral mtDNA was estimated to be 80,000-480,000 years in humans and 0.57-2.72 Myr in common chimpanzees.
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              On the Structure and Origin of Major Glaciation Cycles 1. Linear Responses to Milankovitch Forcing

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                Author and article information

                Journal
                Mitochondrial DNA B Resour
                Mitochondrial DNA B Resour
                Mitochondrial DNA. Part B, Resources
                Taylor & Francis
                2380-2359
                26 September 2017
                2017
                : 2
                : 2
                : 676-678
                Affiliations
                [a ]Department of Marine Biology, Faculty of Marine Science and Technology, Islamic Azad University , Tehran, Iran;
                [b ]Department of Medical Genetic, National Institute of Genetic Engineering and Biotechnology , Tehran, Iran
                Author notes
                CONTACT Massoud Houshmand massoudh@ 123456nigeb.ac.ir Department of Medical Genetic, National Institute of Genetic Engineering and Biotechnology , Tehran, Iran
                Article
                1357434
                10.1080/23802359.2017.1357434
                7799484
                df7afd41-cf35-4840-a705-b2540b98b3b9
                © 2017 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.

                This is an Open Access article distributed under the terms of the Creative Commons Attribution License ( http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

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                Page count
                Figures: 2, Pages: 3, Words: 1647
                Categories
                Research Article
                Mito Communication

                pampus argenteus,cytochrome b,d-loop,persian gulf,gulf of oman

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