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      Cyclic di-GMP differentially tunes a bacterial flagellar motor through a novel class of CheY-like regulators

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          Abstract

          The flagellar motor is a sophisticated rotary machine facilitating locomotion and signal transduction. Owing to its important role in bacterial behavior, its assembly and activity are tightly regulated. For example, chemotaxis relies on a sensory pathway coupling chemical information to rotational bias of the motor through phosphorylation of the motor switch protein CheY. Using a chemical proteomics approach, we identified a novel family of CheY-like (Cle) proteins in Caulobacter crescentus, which tune flagellar activity in response to binding of the second messenger c-di-GMP to a C-terminal extension. In their c-di-GMP bound conformation Cle proteins interact with the flagellar switch to control motor activity. We show that individual Cle proteins have adopted discrete cellular functions by interfering with chemotaxis and by promoting rapid surface attachment of motile cells. This study broadens the regulatory versatility of bacterial motors and unfolds mechanisms that tie motor activity to mechanical cues and bacterial surface adaptation.

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          Most cited references72

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          Bacterial motility on a surface: many ways to a common goal.

          When free-living bacteria colonize biotic or abiotic surfaces, the resultant changes in physiology and morphology have important consequences on their growth, development, and survival. Surface motility, biofilm formation, fruiting body development, and host invasion are some of the manifestations of functional responses to surface colonization. Bacteria may sense the growth surface either directly through physical contact or indirectly by sensing the proximity of fellow bacteria. Extracellular signals that elicit new gene expression include autoinducers, amino acids, peptides, proteins, and carbohydrates. This review focuses mainly on surface motility and makes comparisons to features shared by other surface phenomenon.
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            Two Sample Logo: a graphical representation of the differences between two sets of sequence alignments.

            Two Sample Logo is a web-based tool that detects and displays statistically significant differences in position-specific symbol compositions between two sets of multiple sequence alignments. In a typical scenario, two groups of aligned sequences will share a common motif but will differ in their functional annotation. The inclusion of the background alignment provides an appropriate underlying amino acid or nucleotide distribution and addresses intersite symbol correlations. In addition, the difference detection process is sensitive to the sizes of the aligned groups. Two Sample Logo extends WebLogo, a widely-used sequence logo generator. The source code is distributed under the MIT Open Source license agreement and is available for download free of charge.
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              Coordinating assembly of a bacterial macromolecular machine.

              The assembly of large and complex organelles, such as the bacterial flagellum, poses the formidable problem of coupling temporal gene expression to specific stages of the organelle-assembly process. The discovery that levels of the bacterial flagellar regulatory protein FlgM are controlled by its secretion from the cell in response to the completion of an intermediate flagellar structure (the hook-basal body) was only the first of several discoveries of unique mechanisms that coordinate flagellar gene expression with assembly. In this Review, we discuss this mechanism, together with others that also coordinate gene regulation and flagellar assembly in Gram-negative bacteria.
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                Author and article information

                Contributors
                Role: Reviewing Editor
                Journal
                eLife
                Elife
                eLife
                eLife
                eLife Sciences Publications, Ltd
                2050-084X
                01 November 2017
                2017
                : 6
                : e28842
                Affiliations
                [1 ]deptFocal Area of Infection Biology Biozentrum of the University of Basel BaselSwitzerland
                [2 ]deptDepartment of Molecular, Cellular and Developmental Biology Yale University New HavenUnited States
                [3 ]deptFocal Area of Structural Biology and Biophysics Biozentrum of the University of Basel BaselSwitzerland
                [4 ]deptDepartment of Physics Yale University New HavenUnited States
                Aix Marseille University-CNRS UMR7283 France
                Aix Marseille University-CNRS UMR7283 France
                Author notes
                [‡]

                Deceased.

                [†]

                These authors contributed equally to this work.

                Author information
                http://orcid.org/0000-0002-4524-9569
                http://orcid.org/0000-0002-6746-6564
                http://orcid.org/0000-0002-1637-3376
                Article
                28842
                10.7554/eLife.28842
                5677366
                29091032
                e0def61c-3588-4fd1-96e4-5a631c01f8d8
                © 2017, Nesper et al

                This article is distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use and redistribution provided that the original author and source are credited.

                History
                : 19 May 2017
                : 28 October 2017
                Funding
                Funded by: FundRef http://dx.doi.org/10.13039/501100000781, European Research Council;
                Award ID: Advanced Research Grant to U.J.
                Award Recipient :
                Funded by: FundRef http://dx.doi.org/10.13039/100000952, Paul G. Allen Family Foundation;
                Award ID: 11562
                Award Recipient :
                Funded by: FundRef http://dx.doi.org/10.13039/501100001711, Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung;
                Award ID: Sinergia grant CRSII3_127433
                Award Recipient :
                Funded by: FundRef http://dx.doi.org/10.13039/100000002, National Institutes of Health;
                Award ID: 1R01GM106189
                Award Recipient :
                Funded by: FundRef http://dx.doi.org/10.13039/501100001711, Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung;
                Award ID: 31003A_166652
                Award Recipient :
                Funded by: FundRef http://dx.doi.org/10.13039/501100001711, Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung;
                Award ID: 31003A_173089
                Award Recipient :
                The funders had no role in study design, data collection and interpretation, or the decision to submit the work for publication.
                Categories
                Research Article
                Microbiology and Infectious Disease
                Custom metadata
                Precise control of the bacterial flagellar motor determines bacterial cell dispersal and bacteria-surface interactions.

                Life sciences
                caulobacter crescentus,c-di-gmp,flagellum,attachment,motility,chemotaxis,other
                Life sciences
                caulobacter crescentus, c-di-gmp, flagellum, attachment, motility, chemotaxis, other

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