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      A scalable model of vegetation transitions using deep neural networks

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          Abstract

          1. In times of rapid global change, anticipating vegetation changes and assessing their impacts is of key relevance to managers and policy makers. Yet, predicting vegetation dynamics often suffers from an inherent scale mismatch, with abundant data and process understanding being available at a fine spatial grain, but the relevance for decision‐making is increasing with spatial extent.

          2. We present a novel approach for scaling vegetation dynamics ( SVD), using deep learning to predict vegetation transitions. Vegetation is discretized into a large number (10 3–10 6) of potential states based on its structure, composition and functioning. Transition probabilities between states are estimated via a deep neural network ( DNN) trained on observed or simulated vegetation transitions in combination with environmental variables. The impact of vegetation transitions on important ecological indicators is quantified by probabilistically linking attributes such as carbon storage and biodiversity to vegetation states.

          3. Here, we describe the SVD approach and present results of applying the framework in a meta‐modelling context. We trained a DNN using simulations of a process‐based forest landscape model for a complex mountain forest landscape under different climate scenarios. Subsequently, we evaluated the ability of SVD to project long‐term vegetation dynamics and the resulting changes in forest carbon storage and biodiversity. SVD captured spatial (e.g. elevational gradients) and temporal (e.g. species succession) patterns of vegetation dynamics well, and responded realistically to changing environmental conditions. In addition, we tested the computational efficiency of the approach, highlighting the utility of SVD for country‐ to continental scale applications.

          4. SVD is the—to our knowledge—first vegetation model harnessing deep neural networks. The approach has high predictive accuracy and is able to generalize well beyond training data. SVD was designed to run on widely available input data (e.g. vegetation states defined from remote sensing, gridded global climate datasets) and exceeds the computational performance of currently available highly optimized landscape models by three to four orders of magnitude. We conclude that SVD is a promising approach for combining detailed process knowledge on fine‐grained ecosystem processes with the increasingly available big ecological datasets for improved large‐scale projections of vegetation dynamics.

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          Most cited references36

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          Novel climates, no-analog communities, and ecological surprises

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            Opportunistic Management for Rangelands Not at Equilibrium

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              The interdependence of mechanisms underlying climate-driven vegetation mortality.

              Climate-driven vegetation mortality is occurring globally and is predicted to increase in the near future. The expected climate feedbacks of regional-scale mortality events have intensified the need to improve the simple mortality algorithms used for future predictions, but uncertainty regarding mortality processes precludes mechanistic modeling. By integrating new evidence from a wide range of fields, we conclude that hydraulic function and carbohydrate and defense metabolism have numerous potential failure points, and that these processes are strongly interdependent, both with each other and with destructive pathogen and insect populations. Crucially, most of these mechanisms and their interdependencies are likely to become amplified under a warmer, drier climate. Here, we outline the observations and experiments needed to test this interdependence and to improve simulations of this emergent global phenomenon. Copyright © 2011 Elsevier Ltd. All rights reserved.
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                Author and article information

                Contributors
                werner.rammer@boku.ac.at
                Journal
                Methods Ecol Evol
                Methods Ecol Evol
                10.1111/(ISSN)2041-210X
                MEE3
                Methods in Ecology and Evolution
                John Wiley and Sons Inc. (Hoboken )
                2041-210X
                21 March 2019
                June 2019
                : 10
                : 6 ( doiID: 10.1111/mee3.2019.10.issue-6 )
                : 879-890
                Affiliations
                [ 1 ] Department of Forest‐ and Soil Sciences Institute of Silviculture University of Natural Resources and Life Sciences (BOKU) Vienna Vienna Austria
                Author notes
                [*] [* ] Correspondence

                Werner Rammer

                Email: werner.rammer@ 123456boku.ac.at

                Author information
                https://orcid.org/0000-0001-6871-6759
                Article
                MEE313171
                10.1111/2041-210X.13171
                6582592
                31244986
                e10e38e2-3e7e-4039-9321-05535b9dbbcf
                © 2019 The Authors. Methods in Ecology and Evolution published by John Wiley & Sons Ltd on behalf of British Ecological Society.

                This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.

                History
                : 18 July 2018
                : 26 February 2019
                Page count
                Figures: 4, Tables: 1, Pages: 12, Words: 8852
                Funding
                Funded by: Austrian Science Fund
                Award ID: START Y895‐B25
                Categories
                Research Article
                Ecological Networks and Communities
                Custom metadata
                2.0
                mee313171
                June 2019
                Converter:WILEY_ML3GV2_TO_NLMPMC version:5.6.4 mode:remove_FC converted:13.06.2019

                deep neural networks,ecological forecasting,simulation modelling,state and transition modelling,upscaling,vegetation dynamics,vegetation transitions

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