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      A new species of the genus Leptolalax (Anura: Megophryidae) from southern Vietnam

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          Abstract

          We describe a new species of megophryid frog from Phu Yen Province in southern Vietnam. Leptolalax macrops sp. nov. is distinguished from its congeners by a combination of the following morphological attributes: (1) body size medium (SVL 28.0–29.3 mm in three adult males, 30.3 mm in single adult female); (2) supra-axillary glands present, creamy white; ventrolateral glands indistinct; (3) tympanum externally distinct; (4) dorsal skin roughly granular with larger tubercles, dermal ridges on dorsum absent; (5) rudimentary webbing present between fingers I–II and II–III; rudimentary webbing between all toes; fingers and toes without dermal fringes; (6) in life ventral surface greyish-violet with white speckling; (7) supratympanic fold distinct, dark brown in life; (8) iris bicolored, typically golden in upper half, fading to golden green in lower half; (9) tibia short (TbL/SVL 0.44–0.45 in males); and (10) eyes large and protuberant (ED/SVL 0.15–0.16 in males). From all congeners for which comparable sequences are available, the new species differs markedly in the 16S rRNA mitochondrial gene sequence ( P-distance>5.7%). The new species is currently known only from montane evergreen tropical forests of Song Hinh District, Phu Yen Province, and M’Drak District of Dak Lak Province at elevations of 470–630 m a.s.l.. We suggest the new species should be considered as Data Deficient following the IUCN’s Red List categories. We also report a previously unknown Leptolalax mtDNA lineage from an evergreen tropical forest in the Hoa Thinh District of Phu Yen Province, which may also represent an undescribed species.

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          Vast underestimation of Madagascar's biodiversity evidenced by an integrative amphibian inventory.

          Amphibians are in decline worldwide. However, their patterns of diversity, especially in the tropics, are not well understood, mainly because of incomplete information on taxonomy and distribution. We assess morphological, bioacoustic, and genetic variation of Madagascar's amphibians, one of the first near-complete taxon samplings from a biodiversity hotspot. Based on DNA sequences of 2,850 specimens sampled from over 170 localities, our analyses reveal an extreme proportion of amphibian diversity, projecting an almost 2-fold increase in species numbers from the currently described 244 species to a minimum of 373 and up to 465. This diversity is widespread geographically and across most major phylogenetic lineages except in a few previously well-studied genera, and is not restricted to morphologically cryptic clades. We classify the genealogical lineages in confirmed and unconfirmed candidate species or deeply divergent conspecific lineages based on concordance of genetic divergences with other characters. This integrative approach may be widely applicable to improve estimates of organismal diversity. Our results suggest that in Madagascar the spatial pattern of amphibian richness and endemism must be revisited, and current habitat destruction may be affecting more species than previously thought, in amphibians as well as in other animal groups. This case study suggests that worldwide tropical amphibian diversity is probably underestimated at an unprecedented level and stresses the need for integrated taxonomic surveys as a basis for prioritizing conservation efforts within biodiversity hotspots.
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            TREEFINDER: a powerful graphical analysis environment for molecular phylogenetics

            Background Most analysis programs for inferring molecular phylogenies are difficult to use, in particular for researchers with little programming experience. Results TREEFINDER is an easy-to-use integrative platform-independent analysis environment for molecular phylogenetics. In this paper the main features of TREEFINDER (version of April 2004) are described. TREEFINDER is written in ANSI C and Java and implements powerful statistical approaches for inferring gene tree and related analyzes. In addition, it provides a user-friendly graphical interface and a phylogenetic programming language. Conclusions TREEFINDER is a versatile framework for analyzing phylogenetic data across different platforms that is suited both for exploratory as well as advanced studies.
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              Deciphering amphibian diversity through DNA barcoding: chances and challenges.

              Amphibians globally are in decline, yet there is still a tremendous amount of unrecognized diversity, calling for an acceleration of taxonomic exploration. This process will be greatly facilitated by a DNA barcoding system; however, the mitochondrial population structure of many amphibian species presents numerous challenges to such a standardized, single locus, approach. Here we analyse intra- and interspecific patterns of mitochondrial variation in two distantly related groups of amphibians, mantellid frogs and salamanders, to determine the promise of DNA barcoding with cytochrome oxidase subunit I (cox1) sequences in this taxon. High intraspecific cox1 divergences of 7-14% were observed (18% in one case) within the whole set of amphibian sequences analysed. These high values are not caused by particularly high substitution rates of this gene but by generally deep mitochondrial divergences within and among amphibian species. Despite these high divergences, cox1 sequences were able to correctly identify species including disparate geographic variants. The main problems with cox1 barcoding of amphibians are (i) the high variability of priming sites that hinder the application of universal primers to all species and (ii) the observed distinct overlap of intraspecific and interspecific divergence values, which implies difficulties in the definition of threshold values to identify candidate species. Common discordances between geographical signatures of mitochondrial and nuclear markers in amphibians indicate that a single-locus approach can be problematic when high accuracy of DNA barcoding is required. We suggest that a number of mitochondrial and nuclear genes may be used as DNA barcoding markers to complement cox1.
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                Author and article information

                Journal
                Zool Res
                Zool Res
                Zoological Research
                Science Press (16 Donghuangchenggen Beijie, Beijing 100717, China )
                2095-8137
                28 April 2018
                18 May 2018
                : 39
                : 3
                : 185-201
                Affiliations
                [1 ]Vietnam National Museum of Nature, Vietnam Academy of Science and Technology, Hanoi, Vietnam
                [2 ]Department of Vertebrate Zoology, Biological Faculty, Lomonosov Moscow State University, Moscow 119234, Russia
                [3 ]Faculty of Natural Sciences, Phu Yen University, Tuy Hoa, Phu Yen, Vietnam
                [4 ]College of Education, Hue University, Hue, Vietnam
                [5 ]Institute of Ecology and Biological Resources, Vietnam Academy of Science and Technology, Hanoi, Vietnam
                [6 ]Graduate University of Science and Technology, Vietnam Academy of Science and Technology, Cau Giay, Hanoi, Vietnam
                [7 ]Joint Russian-Vietnamese Tropical Research and Technological Center, Nghia Do, Cau Giay, Hanoi, Vietnam
                Author notes
                [* ]Corresponding author, E-mail: n.poyarkov@ 123456gmail.com
                Article
                ZoolRes-39-3-185
                10.24272/j.issn.2095-8137.2018.009
                5968861
                29643325
                e217c95f-e7f9-497d-934d-2e57d624d761
                © 2018. Editorial Office of Zoological Research, Kunming Institute of Zoology, Chinese Academy of Sciences

                This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

                History
                : 03 September 2017
                : 19 March 2018
                Funding
                The work was partially supported by the Russian Foundation of Basic Research (RFBR 15-29-02771) to N.A.P.; Molecular and phylogenetic analyses were completed with partial financial support from the Russian Science Foundation (RSF 14-50-00029) to N.A.P.
                Categories
                Article

                leptolalax macropssp. nov.,phu yen province,dak lak province,southern coastal region of vietnam

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