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      A flavin-based extracellular electron transfer mechanism in diverse gram-positive bacteria

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          Abstract

          Extracellular electron transfer (EET) describes microbial bioelectrochemical processes in which electrons are transferred from the cytosol to the exterior of the cell. 1 Mineral-respiring bacteria employ elaborate heme-based electron transfer mechanisms, 24 but the existence or basis of other EETs remains largely unknown. In this study, we show that the foodborne pathogen Listeria monocytogenes utilizes a distinctive flavin-based EET mechanism to deliver electrons to iron or an electrode. A forward genetic screen to identify L. monocytogenes mutants with diminished extracellular ferric iron reductase activity led to the characterization of an 8-gene locus responsible for EET. This locus encodes a specialized NADH dehydrogenase that segregates EET from aerobic respiration by channeling electrons to a discrete membrane-localized quinone pool. Other proteins facilitate the assembly of an abundant extracellular flavoprotein that, in conjunction with free-molecule flavin shuttles, mediates electron transfer to extracellular acceptors. This system thus establishes a simple electron conduit compatible with the single-membrane gram-positive cell structure. Activation of EET supports growth on non-fermentable carbon sources and a EET mutant exhibited a competitive defect within the mouse gastrointestinal tract. Orthologs of the identified EET genes are present in hundreds of species across the Firmicutes phylum, including multiple pathogens and commensal members of the intestinal microbiota, and correlate with EET activity in assayed strains. These findings suggest a surprising prevalence of EET-based growth capabilities and establish new relevance for electrogenic bacteria across diverse environments, including host-associated microbial communities and infectious disease.

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          Most cited references44

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          Gut inflammation provides a respiratory electron acceptor for Salmonella

          Salmonella enterica serotype Typhimurium (S. Typhimurium) causes acute gut inflammation by using its virulence factors to invade the intestinal epithelium and survive in mucosal macrophages. The inflammatory response enhances the transmission success of S. Typhimurium by promoting its outgrowth in the gut lumen through unknown mechanisms. Here we show that reactive oxygen species generated during inflammation reacted with endogenous, luminal sulphur compounds (thiosulfate) to form a new respiratory electron acceptor, tetrathionate. The genes conferring the ability to utilize tetrathionate as an electron acceptor produced a growth advantage for S. Typhimurium over the competing microbiota in the lumen of the inflamed gut. We conclude that S. Typhimurium virulence factors induce host-driven production of a new electron acceptor that allows the pathogen to use respiration to compete with fermenting gut microbes. Thus, the ability to trigger intestinal inflammation is crucial for the biology of this diarrhoeal pathogen.
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            Host-derived nitrate boosts growth of E. coli in the inflamed gut.

            Changes in the microbial community structure are observed in individuals with intestinal inflammatory disorders. These changes are often characterized by a depletion of obligate anaerobic bacteria, whereas the relative abundance of facultative anaerobic Enterobacteriaceae increases. The mechanisms by which the host response shapes the microbial community structure, however, remain unknown. We show that nitrate generated as a by-product of the inflammatory response conferred a growth advantage to the commensal bacterium Escherichia coli in the large intestine of mice. Mice deficient in inducible nitric oxide synthase did not support the growth of E. coli by nitrate respiration, suggesting that the nitrate generated during inflammation was host-derived. Thus, the inflammatory host response selectively enhances the growth of commensal Enterobacteriaceae by generating electron acceptors for anaerobic respiration.
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              Extracellular electron transfer mechanisms between microorganisms and minerals.

              Electrons can be transferred from microorganisms to multivalent metal ions that are associated with minerals and vice versa. As the microbial cell envelope is neither physically permeable to minerals nor electrically conductive, microorganisms have evolved strategies to exchange electrons with extracellular minerals. In this Review, we discuss the molecular mechanisms that underlie the ability of microorganisms to exchange electrons, such as c-type cytochromes and microbial nanowires, with extracellular minerals and with microorganisms of the same or different species. Microorganisms that have extracellular electron transfer capability can be used for biotechnological applications, including bioremediation, biomining and the production of biofuels and nanomaterials.
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                Author and article information

                Journal
                0410462
                6011
                Nature
                Nature
                Nature
                0028-0836
                1476-4687
                16 October 2018
                12 September 2018
                October 2018
                12 March 2019
                : 562
                : 7725
                : 140-144
                Affiliations
                [1 ]Department of Molecular and Cell Biology, University of California, Berkeley, Berkeley, CA, 94720
                [2 ]Molecular Foundry, Molecular Biophysics and Integrated Biosciences, and Synthetic Biology Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720
                [3 ]State Key Laboratory of Bioelectronics, Southeast University, Nanjing, 210018, China
                [4 ]QB3/Chemistry Mass Spectrometry Facility, B207 Stanley Hall, University of California, Berkeley, Berkeley, CA, 94720
                [5 ]School of Public Health, University of California, Berkeley, Berkeley, CA, 94720
                Author notes

                Author Contributions

                S.H.L., A.T.I., C.M.A-F., and D.A.P. designed the study. S.H.L, L.S., and J.A.C. performed electrochemical experiments. S.H.L. and A.T.I. performed mass spectrometric experiments. S.H.L., A.L., and R.R-L. performed microbiological and biochemical experiments. S.H.L. and D.A.P. wrote the manuscript.

                Author Information

                D.A.P. has a consulting relationship with and a financial interest in Aduro Biotech; both he and the company stand to benefit from the commercialization of this research. Correspondence and requests for materials should be addressed to D.A.P. ( portnoy@ 123456berkeley.edu ).

                Article
                NIHMS1502928
                10.1038/s41586-018-0498-z
                6221200
                30209391
                e5b4cb37-bd8a-42f8-8102-131c0ac70382

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