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      Histone deacetylase inhibitors for cancer therapy: An evolutionarily ancient resistance response may explain their limited success

      research-article
      1 , 1 ,
      Bioessays
      John Wiley and Sons Inc.
      cancer, chromatin, deacetylase, epigenetic drugs, evolution, histone modification

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          Abstract

          Histone deacetylase inhibitors (HDACi) are in clinical trials against a variety of cancers. Despite early successes, results against the more common solid tumors have been mixed. How is it that so many cancers, and most normal cells, tolerate the disruption caused by HDACi‐induced protein hyperacetylation? And why are a few cancers so sensitive? Here we discuss recent results showing that human cells mount a coordinated transcriptional response to HDACi that mitigates their toxic effects. We present a hypothetical signaling system that could trigger and mediate this response. To account for the existence of such a response, we note that HDACi of various chemical types are made by a variety of organisms to kill or suppress competitors. We suggest that the resistance response in human cells is a necessary evolutionary consequence of exposure to environmental HDACi. We speculate that cancers sensitive to HDACi are those in which the resistance response has been compromised by mutation. Identifying such mutations will allow targeting of HDACi therapy to potentially susceptible cancers.

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          Genome-wide mapping of HATs and HDACs reveals distinct functions in active and inactive genes.

          Histone acetyltransferases (HATs) and deacetylases (HDACs) function antagonistically to control histone acetylation. As acetylation is a histone mark for active transcription, HATs have been associated with active and HDACs with inactive genes. We describe here genome-wide mapping of HATs and HDACs binding on chromatin and find that both are found at active genes with acetylated histones. Our data provide evidence that HATs and HDACs are both targeted to transcribed regions of active genes by phosphorylated RNA Pol II. Furthermore, the majority of HDACs in the human genome function to reset chromatin by removing acetylation at active genes. Inactive genes that are primed by MLL-mediated histone H3K4 methylation are subject to a dynamic cycle of acetylation and deacetylation by transient HAT/HDAC binding, preventing Pol II from binding to these genes but poising them for future activation. Silent genes without any H3K4 methylation signal show no evidence of being bound by HDACs.
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            The world of protein acetylation.

            Acetylation is one of the major post-translational protein modifications in the cell, with manifold effects on the protein level as well as on the metabolome level. The acetyl group, donated by the metabolite acetyl-coenzyme A, can be co- or post-translationally attached to either the α-amino group of the N-terminus of proteins or to the ε-amino group of lysine residues. These reactions are catalyzed by various N-terminal and lysine acetyltransferases. In case of lysine acetylation, the reaction is enzymatically reversible via tightly regulated and metabolism-dependent mechanisms. The interplay between acetylation and deacetylation is crucial for many important cellular processes. In recent years, our understanding of protein acetylation has increased significantly by global proteomics analyses and in depth functional studies. This review gives a general overview of protein acetylation and the respective acetyltransferases, and focuses on the regulation of metabolic processes and physiological consequences that come along with protein acetylation.
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              Eukaryotic evolution, changes and challenges.

              The idea that some eukaryotes primitively lacked mitochondria and were true intermediates in the prokaryote-to-eukaryote transition was an exciting prospect. It spawned major advances in understanding anaerobic and parasitic eukaryotes and those with previously overlooked mitochondria. But the evolutionary gap between prokaryotes and eukaryotes is now deeper, and the nature of the host that acquired the mitochondrion more obscure, than ever before.
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                Author and article information

                Contributors
                b.m.turner@bham.ac.uk
                Journal
                Bioessays
                Bioessays
                10.1002/(ISSN)1521-1878
                BIES
                Bioessays
                John Wiley and Sons Inc. (Hoboken )
                0265-9247
                1521-1878
                22 September 2016
                November 2016
                : 38
                : 11 ( doiID: 10.1002/bies.v38.11 )
                : 1102-1110
                Affiliations
                [ 1 ] Chromatin and Gene Expression Group Institute of Cancer and Genomic SciencesUniversity of Birmingham BirminghamUK
                Author notes
                [*] [* ] Corresponding author:

                Bryan M.Turner

                E‐mail: b.m.turner@ 123456bham.ac.uk

                Article
                BIES201600070
                10.1002/bies.201600070
                5091640
                27717012
                e634a606-a60f-4664-88de-9cddfbc4cdf4
                © 2016 The Authors BioEssays Published by WILEY Periodicals, Inc.

                This is an open access article under the terms of the Creative Commons Attribution License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.

                History
                Page count
                Figures: 3, Tables: 3, Pages: 9, Words: 6367
                Funding
                Funded by: Cancer Research UK
                Categories
                Insights & Perspectives
                Insights & Perspectives
                Hypotheses
                Custom metadata
                2.0
                bies201600070
                November 2016
                Converter:WILEY_ML3GV2_TO_NLMPMC version:4.9.6 mode:remove_FC converted:02.11.2016

                Cell biology
                cancer,chromatin,deacetylase,epigenetic drugs,evolution,histone modification
                Cell biology
                cancer, chromatin, deacetylase, epigenetic drugs, evolution, histone modification

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