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      Assembly of a heptameric STRIPAK complex is required for coordination of light-dependent multicellular fungal development with secondary metabolism in Aspergillus nidulans

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          Abstract

          Eukaryotic striatin forms striatin-interacting phosphatase and kinase (STRIPAK) complexes that control many cellular processes including development, cellular transport, signal transduction, stem cell differentiation and cardiac functions. However, detailed knowledge of complex assembly and its roles in stress responses are currently poorly understood. Here, we discovered six striatin (StrA) interacting proteins (Sips), which form a heptameric complex in the filamentous fungus Aspergillus nidulans. The complex consists of the striatin scaffold StrA, the Mob3-type kinase coactivator SipA, the SIKE-like protein SipB, the STRIP1/2 homolog SipC, the SLMAP-related protein SipD and the catalytic and regulatory phosphatase 2A subunits SipE (PpgA), and SipF, respectively. Single and double deletions of the complex components result in loss of multicellular light-dependent fungal development, secondary metabolite production (e.g. mycotoxin Sterigmatocystin) and reduced stress responses. sipA (Mob3) deletion is epistatic to strA deletion by supressing all the defects caused by the lack of striatin. The STRIPAK complex, which is established during vegetative growth and maintained during the early hours of light and dark development, is mainly formed on the nuclear envelope in the presence of the scaffold StrA. The loss of the scaffold revealed three STRIPAK subcomplexes: (I) SipA only interacts with StrA, (II) SipB-SipD is found as a heterodimer, (III) SipC, SipE and SipF exist as a heterotrimeric complex. The STRIPAK complex is required for proper expression of the heterotrimeric VeA-VelB-LaeA complex which coordinates fungal development and secondary metabolism. Furthermore, the STRIPAK complex modulates two important MAPK pathways by promoting phosphorylation of MpkB and restricting nuclear shuttling of MpkC in the absence of stress conditions. SipB in A. nidulans is similar to human suppressor of IKK-ε(SIKE) protein which supresses antiviral responses in mammals, while velvet family proteins show strong similarity to mammalian proinflammatory NF-KB proteins. The presence of these proteins in A. nidulans further strengthens the hypothesis that mammals and fungi use similar proteins for their immune response and secondary metabolite production, respectively.

          Author summary

          The multisubunit STRIPAK complex has been studied from yeast to human and plays a range of roles from cell-cycle arrest, fruit body formation to neuronal functions. Molecular assembly of the STRIPAK complex and its roles in stress responses are not well-documented. Fungi, with an estimated 1.5 million members are friends and foes of mankind, acting as pathogens, natural product and enzyme producers. In filamentous fungus Aspergillus nidulans, we found a heptameric STRIPAK core complex made from three subcomplexes, which sits on the nuclear envelope and coordinates signal influx for light-dependent fungal development, secondary metabolism and stress responses. STRIPAK complex controls activities of two major Mitogen Activated Protein Kinase (MAPK) signaling pathways through either promoting their phosphorylation or limiting their nuclear localization under resting conditions. These findings establish a basis for how fungi govern signal influx by using multimeric scaffold protein complexes on the nuclear envelope to control different downstream pathways.

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          Most cited references31

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          Fungal secondary metabolism - from biochemistry to genomics.

          Much of natural product chemistry concerns a group of compounds known as secondary metabolites. These low-molecular-weight metabolites often have potent physiological activities. Digitalis, morphine and quinine are plant secondary metabolites, whereas penicillin, cephalosporin, ergotrate and the statins are equally well known fungal secondary metabolites. Although chemically diverse, all secondary metabolites are produced by a few common biosynthetic pathways, often in conjunction with morphological development. Recent advances in molecular biology, bioinformatics and comparative genomics have revealed that the genes encoding specific fungal secondary metabolites are clustered and often located near telomeres. In this review, we address some important questions, including which evolutionary pressures led to gene clustering, why closely related species produce different profiles of secondary metabolites, and whether fungal genomics will accelerate the discovery of new pharmacologically active natural products.
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            Regulation of fungal secondary metabolism.

            Fungi produce a multitude of low-molecular-mass compounds known as secondary metabolites, which have roles in a range of cellular processes such as transcription, development and intercellular communication. In addition, many of these compounds now have important applications, for instance, as antibiotics or immunosuppressants. Genome mining efforts indicate that the capability of fungi to produce secondary metabolites has been substantially underestimated because many of the fungal secondary metabolite biosynthesis gene clusters are silent under standard cultivation conditions. In this Review, I describe our current understanding of the regulatory elements that modulate the transcription of genes involved in secondary metabolism. I also discuss how an improved knowledge of these regulatory elements will ultimately lead to a better understanding of the physiological and ecological functions of these important compounds and will pave the way for a novel avenue to drug discovery through targeted activation of silent gene clusters.
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              VelB/VeA/LaeA complex coordinates light signal with fungal development and secondary metabolism.

              Differentiation and secondary metabolism are correlated processes in fungi that respond to light. In Aspergillus nidulans, light inhibits sexual reproduction as well as secondary metabolism. We identified the heterotrimeric velvet complex VelB/VeA/LaeA connecting light-responding developmental regulation and control of secondary metabolism. VeA, which is primarily expressed in the dark, physically interacts with VelB, which is expressed during sexual development. VeA bridges VelB to the nuclear master regulator of secondary metabolism, LaeA. Deletion of either velB or veA results in defects in both sexual fruiting-body formation and the production of secondary metabolites.
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                Author and article information

                Contributors
                Role: Formal analysisRole: InvestigationRole: MethodologyRole: Visualization
                Role: Formal analysisRole: InvestigationRole: MethodologyRole: ValidationRole: Writing – review & editing
                Role: InvestigationRole: MethodologyRole: SupervisionRole: Writing – review & editing
                Role: Formal analysisRole: InvestigationRole: MethodologyRole: ValidationRole: Writing – review & editing
                Role: InvestigationRole: Methodology
                Role: InvestigationRole: MethodologyRole: Resources
                Role: Formal analysisRole: InvestigationRole: MethodologyRole: ResourcesRole: VisualizationRole: Writing – review & editing
                Role: Formal analysisRole: InvestigationRole: MethodologyRole: Writing – review & editing
                Role: ConceptualizationRole: Formal analysisRole: Funding acquisitionRole: InvestigationRole: MethodologyRole: SupervisionRole: VisualizationRole: Writing – original draftRole: Writing – review & editing
                Role: Editor
                Journal
                PLoS Genet
                PLoS Genet
                plos
                plosgen
                PLoS Genetics
                Public Library of Science (San Francisco, CA USA )
                1553-7390
                1553-7404
                18 March 2019
                March 2019
                : 15
                : 3
                : e1008053
                Affiliations
                [1 ] Biology Department, Maynooth University, Maynooth, Co. Kildare, Ireland
                [2 ] Department of Molecular Biosciences, University of Kansas, 1200 Sunnyside Avenue, Lawrence, Kansas, United States of America
                [3 ] Institute for Biology II—Molecular Plant Physiology, Albert-Ludwigs University Freiburg, Freiburg, Germany
                [4 ] Maynooth University Human Health Research Institute, Maynooth, Co. Kildare, Ireland
                Oregon State University, UNITED STATES
                Author notes

                The authors have declared that no competing interests exist.

                Author information
                http://orcid.org/0000-0001-8667-7378
                http://orcid.org/0000-0002-8371-5233
                http://orcid.org/0000-0001-7170-4775
                http://orcid.org/0000-0002-3046-8240
                http://orcid.org/0000-0002-0283-5322
                Article
                PGENETICS-D-18-01795
                10.1371/journal.pgen.1008053
                6438568
                30883543
                e7353eb9-cec1-4f9b-a55e-14af5760ef20
                © 2019 Elramli et al

                This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

                History
                : 11 September 2018
                : 28 February 2019
                Page count
                Figures: 7, Tables: 0, Pages: 30
                Funding
                Funded by: funder-id http://dx.doi.org/10.13039/501100001602, Science Foundation Ireland;
                Award ID: 13/CDA/2142
                Award Recipient :
                Funded by: funder-id http://dx.doi.org/10.13039/501100001596, Irish Research Council for Science, Engineering and Technology;
                Award ID: GOIPD/2014/178
                Award Recipient :
                Funded by: funder-id http://dx.doi.org/10.13039/501100001602, Science Foundation Ireland;
                Award ID: 12/RI/2346(3)
                Award Recipient :
                Funded by: University of Kansas
                Award ID: Irving S. Johnson Fund
                Award Recipient :
                Funded by: University of Kansas
                Award ID: Irving S. Johnson Fund
                Award Recipient :
                Funded by: funder-id http://dx.doi.org/10.13039/501100001596, Irish Research Council for Science, Engineering and Technology;
                Award ID: GOIPG/2018/35
                Award Recipient :
                The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.This study has been partially funded by Science Foundation Ireland (SFI) 13/CDA/2142 to OB and the grants SE1054/6-2, SE1054/4-2 and SE1054/9-1 of the Deutsche Forschungsgemeinschaft to Stephan Seiler. NE was supported by Libyan postgraduate education fund, OSB and DF by the Irish Research Council (IRC) Postdoctoral Fellowship GOIPD/2014/178, postgraduate scholarship GOIPG/2018/35, respectively. MS facility in Maynooth University was funded by SFI Research Infrastructure grant (12/RI/2346(3)). BRO and CEO were funded by the Irving S. Johnson Fund of the University of Kansas Endowment.
                Categories
                Research Article
                Biology and Life Sciences
                Organisms
                Eukaryota
                Fungi
                Fungal Molds
                Aspergillus
                Aspergillus Nidulans
                Research and Analysis Methods
                Animal Studies
                Experimental Organism Systems
                Yeast and Fungal Models
                Aspergillus Nidulans
                Biology and Life Sciences
                Organisms
                Eukaryota
                Fungi
                Biology and life sciences
                Cell biology
                Signal transduction
                Cell signaling
                Signaling cascades
                MAPK signaling cascades
                Research and Analysis Methods
                Animal Studies
                Experimental Organism Systems
                Model Organisms
                Neurospora Crassa
                Research and Analysis Methods
                Model Organisms
                Neurospora Crassa
                Biology and Life Sciences
                Organisms
                Eukaryota
                Fungi
                Neurospora
                Neurospora Crassa
                Research and Analysis Methods
                Animal Studies
                Experimental Organism Systems
                Yeast and Fungal Models
                Neurospora Crassa
                Biology and Life Sciences
                Genetics
                Gene Expression
                Biology and Life Sciences
                Developmental Biology
                Morphogenesis
                Sexual Differentiation
                Biology and Life Sciences
                Cell Biology
                Cell Processes
                Cellular Stress Responses
                Biology and Life Sciences
                Cell Biology
                Cell Physiology
                Cell Fusion
                Custom metadata
                vor-update-to-uncorrected-proof
                2019-03-28
                All relevant data are within the manuscript and its Supporting Information files. However, mass spectrometry files of all protein purifications are also available from the proteomexchange database (accession number PXD011927)

                Genetics
                Genetics

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