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      Molecular and morphological evidence of hybridization between two dimorphic sympatric species of Fuchsia (Onagraceae)

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          Abstract

          Hybridization is commonly reported in angiosperms, generally based on morphology, and in few cases confirmed by molecular markers. Fuchsia has a long tradition of ornamental cultivars with different hybrids produced by artificial crosses, so natural hybridization between sympatric Fuchsia species could be common. Natural hybridization between F. microphylla and F. thymifolia was tested using six newly developed microsatellites for F. microphylla in addition to other molecular markers with codominant and maternal inheritance. Geometric morphometrics of leaves and floral structures were also used to identify putative hybrids. Hybrids showed a different degree of genetic admixture between both parental species. Chloroplast DNA (cpDNA) sequences indicated that hybridization occurs in both directions, in fact, some of the hybrids showed new haplotypes for cpDNA and ITS (internal transcriber spacer of nuclear ribosomal RNA genes) sequences. The morphology of hybrid individuals varied between the two parental species, but they could be better identified by their leaves and floral tubes. Our study is the first to confirm the hybridization in natural populations of Fuchsia species and suggests that hybridization has probably occurred repeatedly throughout the entire distribution of the species. Phylogeographic analysis of both species will be essential to understanding the impact of hybridization throughout their complete distribution.

          Abstract

          Fuchsia is a genus widely used for ornamental purposes, with different hybrids produced by artificial crosses. We confirmed for the first time the hybridization in natural populations of this genus, using molecular markers and geometric morphometrics of leaves and floral structures. The results suggest that hybridization has probably occurred repeatedly throughout the entire distribution of the species and hybridization occurs in both directions with respect to parental species. The morphology of hybrid individuals varied between the two parental species, but they could be better identified by their leaves and floral tubes.

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          Most cited references83

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          MUSCLE: multiple sequence alignment with high accuracy and high throughput.

          We describe MUSCLE, a new computer program for creating multiple alignments of protein sequences. Elements of the algorithm include fast distance estimation using kmer counting, progressive alignment using a new profile function we call the log-expectation score, and refinement using tree-dependent restricted partitioning. The speed and accuracy of MUSCLE are compared with T-Coffee, MAFFT and CLUSTALW on four test sets of reference alignments: BAliBASE, SABmark, SMART and a new benchmark, PREFAB. MUSCLE achieves the highest, or joint highest, rank in accuracy on each of these sets. Without refinement, MUSCLE achieves average accuracy statistically indistinguishable from T-Coffee and MAFFT, and is the fastest of the tested methods for large numbers of sequences, aligning 5000 sequences of average length 350 in 7 min on a current desktop computer. The MUSCLE program, source code and PREFAB test data are freely available at http://www.drive5. com/muscle.
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            Inference of Population Structure Using Multilocus Genotype Data

            We describe a model-based clustering method for using multilocus genotype data to infer population structure and assign individuals to populations. We assume a model in which there are K populations (where K may be unknown), each of which is characterized by a set of allele frequencies at each locus. Individuals in the sample are assigned (probabilistically) to populations, or jointly to two or more populations if their genotypes indicate that they are admixed. Our model does not assume a particular mutation process, and it can be applied to most of the commonly used genetic markers, provided that they are not closely linked. Applications of our method include demonstrating the presence of population structure, assigning individuals to populations, studying hybrid zones, and identifying migrants and admixed individuals. We show that the method can produce highly accurate assignments using modest numbers of loci—e.g., seven microsatellite loci in an example using genotype data from an endangered bird species. The software used for this article is available from http://www.stats.ox.ac.uk/~pritch/home.html.
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              DnaSP v5: a software for comprehensive analysis of DNA polymorphism data.

              DnaSP is a software package for a comprehensive analysis of DNA polymorphism data. Version 5 implements a number of new features and analytical methods allowing extensive DNA polymorphism analyses on large datasets. Among other features, the newly implemented methods allow for: (i) analyses on multiple data files; (ii) haplotype phasing; (iii) analyses on insertion/deletion polymorphism data; (iv) visualizing sliding window results integrated with available genome annotations in the UCSC browser. Freely available to academic users from: (http://www.ub.edu/dnasp).

                Author and article information

                Contributors
                Role: Associate Editor
                Journal
                AoB Plants
                AoB Plants
                aobpla
                AoB Plants
                Oxford University Press (US )
                2041-2851
                January 2024
                21 December 2023
                21 December 2023
                : 16
                : 1
                : plad089
                Affiliations
                Laboratorio Nacional de Análisis y Síntesis Ecológica (LANASE), Escuela Nacional de Estudios Superiores, Unidad Morelia, Universidad Nacional Autónoma de México , Morelia 58190, Michoacán, México
                Facultad de Biología, Universidad Michoacana de San Nicolás de Hidalgo 58000 , Morelia, Michoacán, México
                Laboratorio Nacional de Análisis y Síntesis Ecológica (LANASE), Escuela Nacional de Estudios Superiores, Unidad Morelia, Universidad Nacional Autónoma de México , Morelia 58190, Michoacán, México
                Instituto de Investigaciones en Ecosistemas y Sustentabilidad, Universidad Nacional Autónoma de México , Morelia 58190, Michoacán, México
                Laboratorio Nacional de Análisis y Síntesis Ecológica (LANASE), Escuela Nacional de Estudios Superiores, Unidad Morelia, Universidad Nacional Autónoma de México , Morelia 58190, Michoacán, México
                Instituto de Investigaciones en Ecosistemas y Sustentabilidad, Universidad Nacional Autónoma de México , Morelia 58190, Michoacán, México
                Laboratorio Nacional de Análisis y Síntesis Ecológica (LANASE), Escuela Nacional de Estudios Superiores, Unidad Morelia, Universidad Nacional Autónoma de México , Morelia 58190, Michoacán, México
                Facultad de Biología, Universidad Michoacana de San Nicolás de Hidalgo 58000 , Morelia, Michoacán, México
                Author notes
                Corresponding author’s e-mail address: eduardo.cuevas@ 123456umich.mx
                Article
                plad089
                10.1093/aobpla/plad089
                10783250
                38213511
                e7eb7496-6c51-4cee-8408-add6dcbc4d68
                © The Author(s) 2023. Published by Oxford University Press on behalf of the Annals of Botany Company.

                This is an Open Access article distributed under the terms of the Creative Commons Attribution License ( https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.

                History
                : 19 July 2023
                : 16 December 2023
                : 05 December 2023
                : 11 January 2024
                Page count
                Pages: 13
                Categories
                Studies
                AcademicSubjects/SCI01210

                Plant science & Botany
                chloroplast dna sequences,fuchsia,geometric morphometrics,hybridization,internal transcriber spacer (its),microsatellites

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