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      Genetic diversity in two Plasmodium vivax protein ligands for reticulocyte invasion

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          Abstract

          The interaction between Plasmodium vivax Duffy binding protein (PvDBP) and Duffy antigen receptor for chemokines (DARC) has been described as critical for the invasion of human reticulocytes, although increasing reports of P. vivax infections in Duffy-negative individuals questions its unique role. To investigate the genetic diversity of the two main protein ligands for reticulocyte invasion, PvDBP and P. vivax Erythrocyte Binding Protein (PvEBP), we analyzed 458 isolates collected in Cambodia and Madagascar from individuals genotyped as Duffy-positive. First, we observed a high proportion of isolates with multiple copies PvEBP from Madagascar (56%) where Duffy negative and positive individuals coexist compared to Cambodia (19%) where Duffy-negative population is virtually absent. Whether the gene amplification observed is responsible for alternate invasion pathways remains to be tested. Second, we found that the PvEBP gene was less diverse than PvDBP gene (12 vs. 33 alleles) but provided evidence for an excess of nonsynonymous mutations with the complete absence of synonymous mutations. This finding reveals that PvEBP is under strong diversifying selection, and confirms the importance of this protein ligand in the invasion process of the human reticulocytes and as a target of acquired immunity. These observations highlight how genomic changes in parasite ligands improve the fitness of P. vivax isolates in the face of immune pressure and receptor polymorphisms.

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          Until recently, P. vivax was thought to infect only Duffy positive individuals, due to its dependence on binding the Duffy blood group antigen as a receptor for reticulocyte invasion and to be absent from parts of Africa where the Duffy-negative phenotype is highly frequent. However, a number of recent studies from across sub-Saharan Africa have reported P. vivax infections in Duffy-negative individuals. Invasion into Duffy-positive reticulocytes is mediated by the P. vivax Duffy binding protein (PvDBP). The mechanism for invasion into Duffy-negative reticulocytes is not known. A homologue of PvDBP, namely, P. vivax erythrocyte binding protein (PvEBP), has been recently identified but its role in Duffy independent invasion is not clearly defined. Here, we provide unique insights into the roles of these two key ligands by studying the genetic diversity of P. vivax isolates collected from Cambodia, where most of the individuals are Duffy positive (not all), and Madagascar where both Duffy-positive and Duffy-negative individuals coexists. Our data suggest that PvEBP may play an important functional role in invasion into Duffy-negative reticulocytes. PvEBP appears to be a target of naturally acquired antibody responses following natural exposure to P. vivax infection and such as a consequence an important vaccine candidate, together with PvDBP.

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          Most cited references45

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          Global Epidemiology of Plasmodium vivax

          Plasmodium vivax is the most widespread human malaria, putting 2.5 billion people at risk of infection. Its unique biological and epidemiological characteristics pose challenges to control strategies that have been principally targeted against Plasmodium falciparum. Unlike P. falciparum, P. vivax infections have typically low blood-stage parasitemia with gametocytes emerging before illness manifests, and dormant liver stages causing relapses. These traits affect both its geographic distribution and transmission patterns. Asymptomatic infections, high-risk groups, and resulting case burdens are described in this review. Despite relatively low prevalence measurements and parasitemia levels, along with high proportions of asymptomatic cases, this parasite is not benign. Plasmodium vivax can be associated with severe and even fatal illness. Spreading resistance to chloroquine against the acute attack, and the operational inadequacy of primaquine against the multiple attacks of relapse, exacerbates the risk of poor outcomes among the tens of millions suffering from infection each year. Without strategies accounting for these P. vivax-specific characteristics, progress toward elimination of endemic malaria transmission will be substantially impeded.
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            Molecules as documents of evolutionary history.

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              A family of erythrocyte binding proteins of malaria parasites.

              Malaria erythrocyte binding proteins use the Duffy blood group antigen (Plasmodium vivax and Plasmodium knowlesi) and sialic acid (Plasmodium falciparum) on the erythrocyte surface as receptors. We had previously cloned the one P. vivax gene, the one P. falciparum gene, and part of one of the three P. knowlesi genes encoding these erythrocyte binding proteins and described the homology between the P. knowlesi and P. vivax genes. We have completed the cloning and sequencing of the three P. knowlesi genes and identified introns in the P. vivax and P. falciparum genes that correct the previously published deduced amino acid sequences. All have similar structures, with one or two exons encoding the signal sequence and the erythrocyte binding domain, an exon encoding the transmembrane domain, and two exons encoding the cytoplasmic domain with the exception of the P. knowlesi beta gene. The regions of amino acid sequence homology among all the genes are the 5' and 3' cysteine-rich regions of the erythrocyte binding domain. On the basis of gene structure and amino acid homology, we propose that the Duffy binding proteins and the sialic acid binding protein are members of a gene family. The level of conservation (approximately 70%) of the deduced amino acid sequences in the 5' cysteine-rich region between the P. vivax protein and the three P. knowlesi proteins is as great as between the three P. knowlesi proteins themselves; the P. knowlesi beta protein just 3' to this cysteine-rich region is homologous to the P. vivax protein but not to the other P. knowlesi proteins. Conservation of amino acid sequences among these organisms, separated in evolution, may indicate the regions where the adhesin function resides.
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                Author and article information

                Contributors
                Role: ConceptualizationRole: Formal analysisRole: InvestigationRole: ValidationRole: Writing – original draft
                Role: ConceptualizationRole: Formal analysisRole: InvestigationRole: ValidationRole: Writing – original draft
                Role: Investigation
                Role: Investigation
                Role: Project administration
                Role: Investigation
                Role: Investigation
                Role: Investigation
                Role: Investigation
                Role: Investigation
                Role: Formal analysis
                Role: Investigation
                Role: Investigation
                Role: Investigation
                Role: ConceptualizationRole: Formal analysisRole: InvestigationRole: Project administrationRole: SupervisionRole: ValidationRole: Writing – original draftRole: Writing – review & editing
                Role: ConceptualizationRole: Formal analysisRole: InvestigationRole: ValidationRole: Writing – original draftRole: Writing – review & editing
                Role: ConceptualizationRole: Data curationRole: Formal analysisRole: Funding acquisitionRole: MethodologyRole: SupervisionRole: ValidationRole: Writing – original draftRole: Writing – review & editing
                Role: Editor
                Journal
                PLoS Negl Trop Dis
                PLoS Negl Trop Dis
                plos
                plosntds
                PLoS Neglected Tropical Diseases
                Public Library of Science (San Francisco, CA USA )
                1935-2727
                1935-2735
                22 October 2018
                October 2018
                : 12
                : 10
                : e0006555
                Affiliations
                [1 ] Malaria Molecular Epidemiology Unit, Institut Pasteur in Cambodia, Phnom Penh, Cambodia
                [2 ] Immunology of Infectious Diseases Unit, Institut Pasteur de Madagascar, Antananarivo, Madagascar
                [3 ] International Centre for Genetic Engineering and Biotechnology (ICGEB), New Delhi, India
                [4 ] Malaria Parasite Biology and Vaccines Unit, Institut Pasteur, Paris, France
                [5 ] Institute for Genome Sciences, University of Maryland, Baltimore, Maryland, United States of America
                University of Florida, UNITED STATES
                Author notes

                The authors have declared that no competing interests exist.

                [¤]

                Current address: Biology of Host-Parasite Interactions Unit, Malaria Genetics and Resistance Group, Institut Pasteur, Paris, France

                Author information
                http://orcid.org/0000-0002-3135-1175
                http://orcid.org/0000-0002-7325-9238
                http://orcid.org/0000-0002-8814-3625
                http://orcid.org/0000-0003-1357-4495
                Article
                PNTD-D-18-00795
                10.1371/journal.pntd.0006555
                6211765
                30346980
                e8baab46-bb78-4735-b21d-a30b363388cd
                © 2018 Roesch et al

                This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

                History
                : 19 May 2018
                : 17 August 2018
                Page count
                Figures: 5, Tables: 1, Pages: 17
                Funding
                Funded by: funder-id http://dx.doi.org/10.13039/501100003762, Institut Pasteur;
                Award ID: Programme Transversaux de Recherche grant, PTR490
                Award Recipient :
                Funded by: funder-id http://dx.doi.org/10.13039/501100003762, Institut Pasteur;
                Award ID: Fondation Pierre Ledoux Jeunesse Internationale
                Award Recipient :
                Funded by: funder-id http://dx.doi.org/10.13039/501100003762, Institut Pasteur;
                Award ID: Calmette and Yersin felllowship
                Award Recipient :
                Funded by: funder-id http://dx.doi.org/10.13039/100000060, National Institute of Allergy and Infectious Diseases;
                Award ID: 1R01AI103228
                Award Recipient :
                This work was supported in part by a Programme Transversaux de Recherche grant, PTR490, from Institut Pasteur. CR was supported by a grant from the Fondation Pierre Ledoux Jeunesse Internationale, SR by a Calmette and Yersin felllowship (Institut Pasteur International Direction) and JP by a NIH grant (1R01AI103228). The funders had no role in study design, data collection and interpretation, or the decision to submit the work for publication.
                Categories
                Research Article
                Biology and Life Sciences
                Parasitology
                Parasite Groups
                Apicomplexa
                Plasmodium
                Biology and Life Sciences
                Cell Biology
                Cellular Types
                Animal Cells
                Bone Marrow Cells
                Reticulocytes
                Biology and Life Sciences
                Cell Biology
                Cellular Types
                Animal Cells
                Blood Cells
                Red Blood Cells
                Reticulocytes
                Biology and Life Sciences
                Genetics
                Gene Amplification
                Medicine and Health Sciences
                Parasitic Diseases
                Malaria
                Medicine and Health Sciences
                Tropical Diseases
                Malaria
                People and Places
                Geographical Locations
                Asia
                Cambodia
                Biology and Life Sciences
                Computational Biology
                Genome Complexity
                Copy Number Variation
                Biology and Life Sciences
                Genetics
                Genomics
                Genome Complexity
                Copy Number Variation
                People and Places
                Geographical Locations
                Africa
                Madagascar
                Biology and Life Sciences
                Cell Biology
                Cellular Types
                Animal Cells
                Blood Cells
                Red Blood Cells
                Custom metadata
                vor-update-to-uncorrected-proof
                2018-11-01
                All relevant data are within the paper and its Supporting Information files.

                Infectious disease & Microbiology
                Infectious disease & Microbiology

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