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      Unlocking the Potential of Machine Learning in Enhancing Quantum Chemical Calculations for Infrared Spectral Prediction

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          Abstract

          Infrared (IR) spectroscopy is a fundamental tool for analyzing molecular structures and chemical interactions by identifying the vibrational modes of molecules. Traditional quantum mechanical methods, such as density functional theory, are highly accurate but computationally expensive and impractical for large-scale molecular systems. This project investigates the integration of machine learning (ML) techniques to predict IR spectra, offering a promising alternative that significantly reduces computational costs while maintaining high accuracy. Additionally, the project explores the utilization of IR spectra for molecular identification and classification into molecular families, enhancing the practical utility of spectral data in various scientific applications. Using TensorFlow-based ML frameworks, models were developed and trained on a data set derived from high-quality computational chemistry analyzers. These data sets, sourced from computationally optimized geometry and IR spectrum from the Gaussian 16 Program Suite, include extensive molecular geometry data, bond lengths, vibrational modes, and other quantum mechanical properties. The models aim to predict key IR spectral features, such as vibrational frequencies and intensities, while maintaining interpretability by linking chemical and quantum mechanical principles to predictions. The integration of ML with IR spectroscopy provides a scalable as well as accelerated solution for analyzing complex molecular systems. This approach holds potential in fields such as drug discovery, materials science, and chemical engineering, where rapid and accurate spectral predictions are critical. This perspective highlights the advancements achieved, the current challenges, and the future potential of ML in the context of IR spectroscopy, providing a solid foundation for further exploration at the intersection of chemistry and data science.

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          Most cited references70

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          MoleculeNet: a benchmark for molecular machine learning † †Electronic supplementary information (ESI) available. See DOI: 10.1039/c7sc02664a

          A large scale benchmark for molecular machine learning consisting of multiple public datasets, metrics, featurizations and learning algorithms.
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            Machine learning molecular dynamics for the simulation of infrared spectra † †Electronic supplementary information (ESI) available. See DOI: 10.1039/c7sc02267k

            Artificial neural networks are combined with molecular dynamics to simulate molecular infrared spectra including anharmonicities and temperature effects.
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              Optimization of Molecules via Deep Reinforcement Learning

              We present a framework, which we call Molecule Deep Q-Networks (MolDQN), for molecule optimization by combining domain knowledge of chemistry and state-of-the-art reinforcement learning techniques (double Q-learning and randomized value functions). We directly define modifications on molecules, thereby ensuring 100% chemical validity. Further, we operate without pre-training on any dataset to avoid possible bias from the choice of that set. MolDQN achieves comparable or better performance against several other recently published algorithms for benchmark molecular optimization tasks. However, we also argue that many of these tasks are not representative of real optimization problems in drug discovery. Inspired by problems faced during medicinal chemistry lead optimization, we extend our model with multi-objective reinforcement learning, which maximizes drug-likeness while maintaining similarity to the original molecule. We further show the path through chemical space to achieve optimization for a molecule to understand how the model works.

                Author and article information

                Journal
                ACS Omega
                ACS Omega
                ao
                acsodf
                ACS Omega
                American Chemical Society
                2470-1343
                28 April 2025
                13 May 2025
                : 10
                : 18
                : 19224-19234
                Affiliations
                []School of Computer Science and Engineering (SCOPE), Vellore Institute of Technology , Vellore, Tamil Nadu 632014, India
                []Department of Chemistry, School of Advanced Sciences, Vellore Institute of Technology , Vellore 632014, India
                Author notes
                Author information
                https://orcid.org/0000-0002-9435-5712
                Article
                10.1021/acsomega.5c02405
                12079248
                e94bc435-3a34-4675-a42d-89413cfc8ae8
                © 2025 The Authors. Published by American Chemical Society

                Permits non-commercial access and re-use, provided that author attribution and integrity are maintained; but does not permit creation of adaptations or other derivative works ( https://creativecommons.org/licenses/by-nc-nd/4.0/).

                History
                : 14 March 2025
                : 27 March 2025
                : 21 March 2025
                Funding
                Funded by: VIT University, doi 10.13039/501100004728;
                Award ID: NA
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                ao5c02405
                ao5c02405

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