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      DNA barcoding of a tropical anguillid eel, Anguilla bicolor (Actinopterygii: Anguilliformes), in Indo-Pacific region and notes on its population structure

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          Abstract

          ABSTRACT The tropical anguillid eel, Anguilla bicolor McCelland, 1844, includes two subspecies, Anguilla bicolor bicolor McCelland, 1844 and Anguilla bicolor pacifica Schmidt, 1928, and is distributed across the Indo-Pacific region. Although A. bicolor is widely distributed and recognized as an important fish resource in the Indo-Pacific region, few studies have been conducted on its genetic variation and population structure. DNA barcoding of A. bicolor specimens collected in the Indo-Pacific region was carried out in this study using mitochondrial cytochrome c oxidase subunit I. Anguilla bicolor was found to diverge genetically, which supported its classification into two different subspecies. In addition, our study showed that A. bicolor bicolor had two genetically distinct populations/groups, and these different populations co-occur geographically in Indonesia and Malaysia in the eastern Indian Ocean. Our findings suggest that the eel larvae might be transported from at least two geographically different spawning grounds in the Indian Ocean, and then recruited to and settled in the same habitats in Indonesian and Malaysian waters. The molecular evidence calls for further research on the life history, stock assessment and protection of the populations of A. bicolor bicolor in Indonesia and Malaysia.

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          Most cited references40

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          MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms.

          The Molecular Evolutionary Genetics Analysis (Mega) software implements many analytical methods and tools for phylogenomics and phylomedicine. Here, we report a transformation of Mega to enable cross-platform use on Microsoft Windows and Linux operating systems. Mega X does not require virtualization or emulation software and provides a uniform user experience across platforms. Mega X has additionally been upgraded to use multiple computing cores for many molecular evolutionary analyses. Mega X is available in two interfaces (graphical and command line) and can be downloaded from www.megasoftware.net free of charge.
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            Basic local alignment search tool.

            A new approach to rapid sequence comparison, basic local alignment search tool (BLAST), directly approximates alignments that optimize a measure of local similarity, the maximal segment pair (MSP) score. Recent mathematical results on the stochastic properties of MSP scores allow an analysis of the performance of this method as well as the statistical significance of alignments it generates. The basic algorithm is simple and robust; it can be implemented in a number of ways and applied in a variety of contexts including straightforward DNA and protein sequence database searches, motif searches, gene identification searches, and in the analysis of multiple regions of similarity in long DNA sequences. In addition to its flexibility and tractability to mathematical analysis, BLAST is an order of magnitude faster than existing sequence comparison tools of comparable sensitivity.
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              Clustal W and Clustal X version 2.0.

              The Clustal W and Clustal X multiple sequence alignment programs have been completely rewritten in C++. This will facilitate the further development of the alignment algorithms in the future and has allowed proper porting of the programs to the latest versions of Linux, Macintosh and Windows operating systems. The programs can be run on-line from the EBI web server: http://www.ebi.ac.uk/tools/clustalw2. The source code and executables for Windows, Linux and Macintosh computers are available from the EBI ftp site ftp://ftp.ebi.ac.uk/pub/software/clustalw2/
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                Author and article information

                Journal
                zool
                Zoologia (Curitiba)
                Zoologia (Curitiba)
                Sociedade Brasileira de Zoologia (Curitiba, PR, Brazil )
                1984-4670
                1984-4689
                2021
                : 38
                : e59332
                Affiliations
                [1] orgnameUniversiti Brunei Darussalam orgdiv1Faculty of Science orgdiv2Environmental and Life Sciences Programme Brunei Darussalam
                [3] West-Nusa Tenggara orgnameUniversitas Mataram orgdiv1Faculty of Animal Science orgdiv2Laboratory of Microbiology and Biotechnology Indonesia
                [2] Surabaya orgnameUniversitas Airlangga orgdiv1Faculty of Fisheries and Marine orgdiv2Department of Aquaculture Indonesia
                Article
                S1984-46702021000100501 S1984-4670(21)03800000501
                10.3897/zoologia.38.e59332
                e998bb49-d5c3-4cee-8e36-d6c97895353d

                This work is licensed under a Creative Commons Attribution 4.0 International License.

                History
                : 05 October 2020
                : 09 December 2020
                Page count
                Figures: 0, Tables: 0, Equations: 0, References: 38, Pages: 0
                Product

                SciELO Brazil

                Categories
                Short Communication

                tropical species,haplotype network,Anguillid eel,molecular phylogeny

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