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      Detection of Phospho-Sites Generated by Protein Kinase CK2 in CFTR: Mechanistic Aspects of Thr1471 Phosphorylation

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          Abstract

          By mass spectrometry analysis of mouse Cystic Fibrosis Transmembrane-conductance Regulator (mCFTR) expressed in yeast we have detected 21 phosphopeptides accounting for 22 potential phospho-residues, 12 of which could be unambiguously assigned. Most are conserved in human CFTR (hCFTR) and the majority cluster in the Regulatory Domain, lying within consensus sequences for PKA, as identified in previous mammalian studies. This validates our yeast expression model. A number of phospho-residues were novel and human conserved, notably mouse Ser670, Ser723, Ser737, and Thr1467, that all lie in acidic sequences, compatible with their phosphorylation by protein kinase CK2. Thr1467 is localized in the C-terminal tail, embedded in a functionally important and very acidic sequence (EETEEE) which displays an optimal consensus for protein kinase CK2. Herein, we show that Thr1467, homologous to human Thr1471 is readily phosphorylated by CK2. Indeed a 42 amino acid peptide encompassing the C-terminal segment of human CFTR is readily phosphorylated at Thr1471 with favorable kinetics (Km 1.7 µM) by CK2 holoenzyme, but neither by its isolated catalytic subunit nor by other acidophilic Ser/Thr kinases (CK1, PLK2/3, GCK/FAM20C). Our finding that by treating CFTR expressing BHK cells with the very specific CK2 inhibitor CX4945, newly synthesized wild type CFTR (and even more its Phe508del mutant) accumulates more abundantly than in the absence of CK2 inhibitor, supports the conclusion that phosphorylation of CFTR by CK2 correlates with decreased stability of the protein.

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          Most cited references35

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          Tricine-SDS-PAGE.

          Tricine-SDS-PAGE is commonly used to separate proteins in the mass range 1-100 kDa. It is the preferred electrophoretic system for the resolution of proteins smaller than 30 kDa. The concentrations of acrylamide used in the gels are lower than in other electrophoretic systems. These lower concentrations facilitate electroblotting, which is particularly crucial for hydrophobic proteins. Tricine-SDS-PAGE is also used preferentially for doubled SDS-PAGE (dSDS-PAGE), a proteomic tool used to isolate extremely hydrophobic proteins for mass spectrometric identification, and it offers advantages for resolution of the second dimension after blue-native PAGE (BN-PAGE) and clear-native PAGE (CN-PAGE). Here I describe a protocol for Tricine-SDS-PAGE, which includes efficient methods for Coomassie blue or silver staining and electroblotting, thereby increasing the versatility of the approach. This protocol can be completed in 1-2 d.
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            Protein structure prediction using Rosetta.

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              One-thousand-and-one substrates of protein kinase CK2?

              CK2 (formerly termed "casein kinase 2") is a ubiquitous, highly pleiotropic and constitutively active Ser/Thr protein kinase whose implication in neoplasia, cell survival, and virus infection is supported by an increasing number of arguments. Here an updated inventory of 307 CK2 protein substrates is presented. More than one-third of these are implicated in gene expression and protein synthesis as being either transcriptional factors (60) or effectors of DNA/RNA structure (50) or translational elements. Also numerous are signaling proteins and proteins of viral origin or essential to virus life cycle. In comparison, only a minority of CK2 targets (a dozen or so) are classical metabolic enzymes. An analysis of 308 sites phosphorylated by CK2 highlights the paramount relevance of negatively charged side chains that are (by far) predominant over any other residues at positions n+3 (the most crucial one), n+1, and n+2. Based on this signature, it is predictable that proteins phosphorylated by CK2 are much more numerous than those identified to date, and it is possible that CK2 alone contributes to the generation of the eukaryotic phosphoproteome more so than any other individual protein kinase. The possibility that CK2 phosphosites play some global role, e.g., by destabilizing alpha helices, counteracting caspase cleavage, and generating adhesive motifs, will be discussed.
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                Author and article information

                Contributors
                Role: Editor
                Journal
                PLoS One
                PLoS ONE
                plos
                plosone
                PLoS ONE
                Public Library of Science (San Francisco, USA )
                1932-6203
                2013
                18 September 2013
                : 8
                : 9
                : e74232
                Affiliations
                [1 ]Department of Biomedical Sciences, University of Padova, and CNR Institute of Neurosciences, Padova, Italy
                [2 ]Proteomic Center of Padova University, VIMM, and Padova University Hospital, Padova, Italy
                [3 ]Faculty of Life Sciences, University of Manchester, Manchester, United Kingdom
                [4 ]Department of Molecular Medicine, University of Padova, Padova, Italy
                [5 ]Division of Cardiovascular and Diabetes Medicine, Ninewells Hospital and Medical School, University of Dundee, Dundee, United Kingdom
                Cedars-Sinai Medical Center, United States of America
                Author notes

                Competing Interests: The authors have declared that no competing interests exist.

                Conceived and designed the experiments: LAP AV AM. Performed the experiments: AV CF GC MAP KT. Analyzed the data: LAP AV GA AM RCF. Contributed reagents/materials/analysis tools: NC KT AA RCF. Wrote the paper: LAP AM AV.

                [¤]

                Current address: Al-Qunfudhah University College, Umm Al-Qura University, Makkah Al-Mukarramah, Saudi Arabia

                Article
                PONE-D-13-22532
                10.1371/journal.pone.0074232
                3776838
                24058532
                ea372fce-45d9-43d6-92cb-a729dbc98b45
                Copyright @ 2013

                This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

                History
                : 30 May 2013
                : 29 July 2013
                Page count
                Pages: 10
                Funding
                LAP was supported by the Fondazione per la Ricerca sulla Fibrosi Cistica (grant #3/2011 adopted by Delegazione FFC della Valdadige and Associazione Trentina FC Fiaba “Il Villaggio di Natale” in ricordo di Massimiliano e Sebastiano) and Associazione Italiana per la Ricerca sul Cancro. This work was funded also by Wellcome Trust (grant numbers 088929 to LAP with AM and 069150 to AM). RCF acknowledges the Cystic Fibrosis Foundation for funding under the auspices of its CFTR 3D Structure Consortium. NC was funded by a BBSRC PhD studentship. The authors are grateful to the Cassa di Risparmio di Padova e Rovigo (Cariparo) Holding for funding the acquisition of the LTQ-Orbitrap XL mass spectrometer. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.
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