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      SET9-Mediated Regulation of TGF-β Signaling Links Protein Methylation to Pulmonary Fibrosis

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          Summary

          TGF-β signaling regulates a variety of cellular processes, including proliferation, apoptosis, differentiation, immune responses, and fibrogenesis. Here, we describe a lysine methylation-mediated mechanism that controls the pro-fibrogenic activity of TGF-β. We find that the methyltransferase Set9 potentiates TGF-β signaling by targeting Smad7, an inhibitory downstream effector. Smad7 methylation promotes interaction with the E3 ligase Arkadia and, thus, ubiquitination-dependent degradation. Depletion or pharmacological inhibition of Set9 results in elevated Smad7 protein levels and inhibits TGF-β-dependent expression of genes encoding extracellular matrix components. The inhibitory effect of Set9 on TGF-β-mediated extracellular matrix production is further demonstrated in mouse models of pulmonary fibrosis. Lung fibrosis induced by bleomycin or Ad-TGF-β treatment was highly compromised in Set9-deficient mice. These results uncover a complex regulatory interplay among multiple Smad7 modifications and highlight the possibility that protein methyltransferases may represent promising therapeutic targets for treating lung fibrosis.

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          Highlights

          • Set9 (Setd7) methylates Smad7 at lysine-70

          • Methylated Smad7 interacts with Arkadia and is rapidly degraded

          • Set9 function is required for TGF-β-mediated activation of ECM genes

          • Set9 function is required for bleomycin- or Ad-TGF-β-induced pulmonary fibrosis

          Abstract

          Elkouris et al. find that Set9 regulates the TGF-β-signaling pathway and is required for the development of pulmonary fibrosis in mice. The authors find that Set9-mediated methylation of inhibitory Smad7 leads to its degradation, thus affecting TGF-β-dependent activation of extracellular matrix genes.

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          Most cited references26

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          Transforming growth factor beta in tissue fibrosis.

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            New insights into TGF-beta-Smad signalling.

            Transforming growth factor beta (TGF-beta) initiates its diverse cellular responses by binding to and activating specific cell surface receptors that have intrinsic serine/threonine kinase activity. These activated TGF-beta receptors stimulate the phosphorylation of receptor-regulated Smad proteins, which in turn form complexes with Smad4 that accumulate in the nucleus and regulate the transcription of target genes. TGF-beta responses can be cell-type specific and are dependent on both the concentration of TGF-beta signalling components and the activity of other signal transduction pathways, which can either synergize with or antagonize the TGF-beta pathway. Recent research has provided insights into the specificity determinants of TGF-beta-Smad signalling, including combinatorial ligand-receptor associations, selective interactions between the Smads and other pathway components that are mediated through defined binding motifs, and the differential regulation of duration and intensity of signalling.
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              TGF-beta and the Smad signaling pathway support transcriptomic reprogramming during epithelial-mesenchymal cell transition.

              Epithelial-mesenchymal transition (EMT) contributes to normal tissue patterning and carcinoma invasiveness. We show that transforming growth factor (TGF)-beta/activin members, but not bone morphogenetic protein (BMP) members, can induce EMT in normal human and mouse epithelial cells. EMT correlates with the ability of these ligands to induce growth arrest. Ectopic expression of all type I receptors of the TGF-beta superfamily establishes that TGF-beta but not BMP pathways can elicit EMT. Ectopic Smad2 or Smad3 together with Smad4 enhanced, whereas dominant-negative forms of Smad2, Smad3, or Smad4, and wild-type inhibitory Smad7, blocked TGF-beta-induced EMT. Transcriptomic analysis of EMT kinetics identified novel TGF-beta target genes with ligand-specific responses. Using a TGF-beta type I receptor that cannot activate Smads nor induce EMT, we found that Smad signaling is critical for regulation of all tested gene targets during EMT. One such gene, Id2, whose expression is repressed by TGF-beta1 but induced by BMP-7 is critical for regulation of at least one important myoepithelial marker, alpha-smooth muscle actin, during EMT. Thus, based on ligand-specific responsiveness and evolutionary conservation of the gene expression patterns, we begin deciphering a genetic network downstream of TGF-beta and predict functional links to the control of cell proliferation and EMT.
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                Author and article information

                Contributors
                Journal
                Cell Rep
                Cell Rep
                Cell Reports
                Cell Press
                2211-1247
                09 June 2016
                21 June 2016
                09 June 2016
                : 15
                : 12
                : 2733-2744
                Affiliations
                [1 ]Biomedical Sciences Research Center Alexander Fleming, Vari 16672, Greece
                [2 ]Biomedical Research Foundation, Academy of Athens, Athens 11527, Greece
                [3 ]Structural Genomics Consortium, University of Toronto, Toronto, ON M5G 1L7, Canada
                Author notes
                []Corresponding author talianidis@ 123456fleming.gr
                Article
                S2211-1247(16)30649-0
                10.1016/j.celrep.2016.05.051
                4920893
                27292644
                ea6b1c08-6dba-4db4-b032-0cb2bbb5f992
                © 2016 The Author(s)

                This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).

                History
                : 5 October 2015
                : 14 February 2016
                : 12 May 2016
                Categories
                Article

                Cell biology
                Cell biology

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