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      Automatic adventitious respiratory sound analysis: A systematic review

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          Abstract

          Background

          Automatic detection or classification of adventitious sounds is useful to assist physicians in diagnosing or monitoring diseases such as asthma, Chronic Obstructive Pulmonary Disease (COPD), and pneumonia. While computerised respiratory sound analysis, specifically for the detection or classification of adventitious sounds, has recently been the focus of an increasing number of studies, a standardised approach and comparison has not been well established.

          Objective

          To provide a review of existing algorithms for the detection or classification of adventitious respiratory sounds. This systematic review provides a complete summary of methods used in the literature to give a baseline for future works.

          Data sources

          A systematic review of English articles published between 1938 and 2016, searched using the Scopus (1938-2016) and IEEExplore (1984-2016) databases. Additional articles were further obtained by references listed in the articles found. Search terms included adventitious sound detection, adventitious sound classification, abnormal respiratory sound detection, abnormal respiratory sound classification, wheeze detection, wheeze classification, crackle detection, crackle classification, rhonchi detection, rhonchi classification, stridor detection, stridor classification, pleural rub detection, pleural rub classification, squawk detection, and squawk classification.

          Study selection

          Only articles were included that focused on adventitious sound detection or classification, based on respiratory sounds, with performance reported and sufficient information provided to be approximately repeated.

          Data extraction

          Investigators extracted data about the adventitious sound type analysed, approach and level of analysis, instrumentation or data source, location of sensor, amount of data obtained, data management, features, methods, and performance achieved.

          Data synthesis

          A total of 77 reports from the literature were included in this review. 55 (71.43%) of the studies focused on wheeze, 40 (51.95%) on crackle, 9 (11.69%) on stridor, 9 (11.69%) on rhonchi, and 18 (23.38%) on other sounds such as pleural rub, squawk, as well as the pathology. Instrumentation used to collect data included microphones, stethoscopes, and accelerometers. Several references obtained data from online repositories or book audio CD companions. Detection or classification methods used varied from empirically determined thresholds to more complex machine learning techniques. Performance reported in the surveyed works were converted to accuracy measures for data synthesis.

          Limitations

          Direct comparison of the performance of surveyed works cannot be performed as the input data used by each was different. A standard validation method has not been established, resulting in different works using different methods and performance measure definitions.

          Conclusion

          A review of the literature was performed to summarise different analysis approaches, features, and methods used for the analysis. The performance of recent studies showed a high agreement with conventional non-automatic identification. This suggests that automated adventitious sound detection or classification is a promising solution to overcome the limitations of conventional auscultation and to assist in the monitoring of relevant diseases.

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          Most cited references66

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          Is Open Access

          Fast-Find: A novel computational approach to analyzing combinatorial motifs

          Background Many vital biological processes, including transcription and splicing, require a combination of short, degenerate sequence patterns, or motifs, adjacent to defined sequence features. Although these motifs occur frequently by chance, they only have biological meaning within a specific context. Identifying transcripts that contain meaningful combinations of patterns is thus an important problem, which existing tools address poorly. Results Here we present a new approach, Fast-FIND (Fast-Fully Indexed Nucleotide Database), that uses a relational database to support rapid indexed searches for arbitrary combinations of patterns defined either by sequence or composition. Fast-FIND is easy to implement, takes less than a second to search the entire Drosophila genome sequence for arbitrary patterns adjacent to sites of alternative polyadenylation, and is sufficiently fast to allow sensitivity analysis on the patterns. We have applied this approach to identify transcripts that contain combinations of sequence motifs for RNA-binding proteins that may regulate alternative polyadenylation. Conclusion Fast-FIND provides an efficient way to identify transcripts that are potentially regulated via alternative polyadenylation. We have used it to generate hypotheses about interactions between specific polyadenylation factors, which we will test experimentally.
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            • Record: found
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            Respiratory sounds. Advances beyond the stethoscope.

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              • Article: not found

              No unbiased estimator of the variance of K-fold cross-validation

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                Author and article information

                Contributors
                Role: Editor
                Journal
                PLoS One
                PLoS ONE
                plos
                plosone
                PLoS ONE
                Public Library of Science (San Francisco, CA USA )
                1932-6203
                2017
                26 May 2017
                : 12
                : 5
                : e0177926
                Affiliations
                [001]Department of Electrical and Electronic Engineering, Imperial College London, London, United Kingdom
                Charité - Universitätsmedizin Berlin, GERMANY
                Author notes

                Competing Interests: The authors have declared that no competing interests exist.

                • Conceptualization: RXAP ERV.

                • Data curation: RXAP.

                • Formal analysis: RXAP ERV.

                • Investigation: RXAP SB ERV.

                • Methodology: RXAP SB ERV.

                • Project administration: ERV.

                • Resources: RXAP SB ERV.

                • Software: RXAP.

                • Supervision: ERV.

                • Validation: RXAP SB ERV.

                • Visualization: RXAP SB ERV.

                • Writing – original draft: RXAP.

                • Writing – review & editing: SB ERV.

                Author information
                http://orcid.org/0000-0002-4731-2752
                Article
                PONE-D-16-49768
                10.1371/journal.pone.0177926
                5446130
                28552969
                eb5a6f0d-1d72-4b5a-9b19-4e886d50a097
                © 2017 Pramono et al

                This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

                History
                : 16 December 2016
                : 5 May 2017
                Page count
                Figures: 1, Tables: 6, Pages: 43
                Funding
                The authors received no specific funding for this work.
                Categories
                Research Article
                Engineering and Technology
                Equipment
                Audio Equipment
                Microphones
                Research and Analysis Methods
                Research Assessment
                Systematic Reviews
                Medicine and Health Sciences
                Pulmonology
                Chronic Obstructive Pulmonary Disease
                Physical Sciences
                Physics
                Thermodynamics
                Entropy
                Computer and Information Sciences
                Artificial Intelligence
                Artificial Neural Networks
                Biology and Life Sciences
                Computational Biology
                Computational Neuroscience
                Artificial Neural Networks
                Biology and Life Sciences
                Neuroscience
                Computational Neuroscience
                Artificial Neural Networks
                Computer and Information Sciences
                Data Management
                Physical Sciences
                Mathematics
                Applied Mathematics
                Algorithms
                Machine Learning Algorithms
                Research and Analysis Methods
                Simulation and Modeling
                Algorithms
                Machine Learning Algorithms
                Computer and Information Sciences
                Artificial Intelligence
                Machine Learning
                Machine Learning Algorithms
                Physical Sciences
                Mathematics
                Applied Mathematics
                Algorithms
                Research and Analysis Methods
                Simulation and Modeling
                Algorithms
                Custom metadata
                All relevant data are within the paper and its Supporting Information files.

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