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      Population genetic structure of Marbled Rockfish, Sebastiscusmarmoratus (Cuvier, 1829), in the northwestern Pacific Ocean

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          Abstract

          Abstract

          Sebastiscus marmoratus is an ovoviviparous fish widely distributed in the northwestern Pacific. To examine the gene flow and test larval dispersal strategy of S. marmoratus in Chinese and Japanese coastal waters, 421 specimens were collected from 22 localities across its natural distribution. A 458 base-pair fragment of the mitochondrial DNA (mtDNA) control region was sequenced to examine genetic diversity and population structure. One-hundred-six variable sites defined 166 haplotypes. The populations of S. marmoratus showed high haplotype diversity with a range from 0.8587 to 0.9996, indicating a high level of intrapopulation genetic diversity. Low non-significant genetic differentiation was estimated among populations except those of Hyogo, Behai, and Niiigata, which showed significant genetic differences from the other populations. The demographic history examined by neutrality tests, mismatch distribution analysis, and Bayesian skyline analysis suggested a sudden population expansion dating to the late Pleistocene. Recent population expansion in the last glacial period, wide dispersal of larvae by coastal currents, and the homogeneity of the environment may have important influences on the population genetic pattern. Knowledge of genetic diversity and genetic structure will be crucial to establish appropriate fishery management of S. marmoratus .

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          Ecological roulette: the global transport of nonindigenous marine organisms.

          Ocean-going ships carry, as ballast, seawater that is taken on in port and released at subsequent ports of call. Plankton samples from Japanese ballast water released in Oregon contained 367 taxa. Most taxa with a planktonic phase in their life cycle were found in ballast water, as were all major marine habitat and trophic groups. Transport of entire coastal planktonic assemblages across oceanic barriers to similar habitats renders bays, estuaries, and inland waters among the most threatened ecosystems in the world. Presence of taxonomically difficult or inconspicuous taxa in these samples suggests that ballast water invasions are already pervasive.
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            Evolutionary implications of non-neutral mitochondrial genetic variation.

            Sequence variation in mitochondrial DNA (mtDNA) was traditionally considered to be selectively neutral. However, an accumulating body of evidence indicates that this assumption is invalid. Furthermore, recent advances indicate that mtDNA polymorphism can be maintained within populations via selection on the joint mitochondrial-nuclear genotype. Here, we review the latest findings that show mitochondrial and cytoplasmic genetic variation for life-history traits and fitness. We highlight the key importance of the mitochondrial-nuclear interaction as a unit of selection and discuss the consequences of mitochondrially encoded fitness effects on several key evolutionary processes. Our goal is to draw attention to the profound, yet neglected, influence of the mitochondrial genome on the fields of ecology and evolution.
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              Response of Western Pacific marginal seas to glacial cycles: paleoceanographic and sedimentological features

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                Author and article information

                Contributors
                Journal
                Zookeys
                Zookeys
                2
                urn:lsid:arphahub.com:pub:45048d35-bb1d-5ce8-9668-537e44bd4c7e
                urn:lsid:zoobank.org:pub:91BD42D4-90F1-4B45-9350-EEF175B1727A
                ZooKeys
                Pensoft Publishers
                1313-2989
                1313-2970
                2019
                14 March 2019
                : 830
                : 127-144
                Affiliations
                [1 ] The Key Laboratory of Mariculture (Ocean University of China), Ministry of Education, 266071 Qingdao, China Ocean University of China Qingdao China
                [2 ] Laboratory for Marine Fisheries and Aquaculture, Qingdao National Laboratory for Marine Science and Technology, 266072 Qingdao, China Qingdao National Laboratory for Marine Science and Technology Qingdao China
                [3 ] South China Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, 510003 Guangzhou, China South China Sea Fisheries Research Institute Guangzhou China
                [4 ] Key Laboratory of Marine Ecology and Environment Sciences, Institute of Oceanology, Chinese Academy of Sciences, 266071 Qingdao, China Institute of Oceanology, Chinese Academy of Sciences Qingdao China
                [5 ] National Research Institute of Fisheries Science, Japan Fisheries Research and Education Agency, 2368648 Yokohama, Japan Japan Fisheries Research and Education Agency Yokohama Japan
                [6 ] Fisheries College, Zhejiang Ocean University, 316000 Zhoushan, China Zhejiang Ocean University Zhoushan China
                Author notes
                Corresponding author: Tianxiang Gao ( gaotianxiang0611@ 123456163.com )

                Academic editor: M.E. Bichuette

                Article
                30586 urn:lsid:arphahub.com:pub:a2cc5764-374c-5931-9586-cee9839ca8fa urn:lsid:zoobank.org:pub:11C4F8F6-256F-4C41-A961-A2847CE94D4F
                10.3897/zookeys.830.30586
                6428785
                ec709428-7f74-4ede-ae35-301ecba597e5
                Lu Liu, Xiumei Zhang, Chunhou Li, Hui Zhang, Takashi Yanagimoto, Na Song, Tianxiang Gao

                This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

                History
                : 16 October 2018
                : 02 February 2019
                Funding
                This work was supported by the National Natural Science Foundation of China (grant numbers 41776171, 41176117, 31172447) and Fund of Key Laboratory of South China Sea Fishery Resources Exploitation & Utilization, Ministry of Agriculture and Rural Affairs, P. R. China (grant numbers FREU2018-04).
                Categories
                Research Article
                Sebastidae
                Biodiversity & Conservation
                Biogeography
                Genetics
                Asia
                Pacific

                Animal science & Zoology
                genetic diversity,genetic structure,historical population demographics,mtdna control region, sebastiscus marmoratus

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