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      Coiled‐coils: The long and short of it

      research-article
      1 , 1 , 2 ,
      Bioessays
      John Wiley and Sons Inc.
      allostery, coiled‐coil, molecular ruler, molecular spacer, scaffold

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          Abstract

          Coiled‐coils are found in proteins throughout all three kingdoms of life. Coiled‐coil domains of some proteins are almost invariant in sequence and length, betraying a structural and functional role for amino acids along the entire length of the coiled‐coil. Other coiled‐coils are divergent in sequence, but conserved in length, thereby functioning as molecular spacers. In this capacity, coiled‐coil proteins influence the architecture of organelles such as centrioles and the Golgi, as well as permit the tethering of transport vesicles. Specialized coiled‐coils, such as those found in motor proteins, are capable of propagating conformational changes along their length that regulate cargo binding and motor processivity. Coiled‐coil domains have also been identified in enzymes, where they function as molecular rulers, positioning catalytic activities at fixed distances. Finally, while coiled‐coils have been extensively discussed for their potential to nucleate and scaffold large macromolecular complexes, structural evidence to substantiate this claim is relatively scarce.

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          Structure of the haemagglutinin membrane glycoprotein of influenza virus at 3 A resolution.

          The haemagglutinin glycoprotein of influenza virus is a trimer comprising two structurally distinct regions: a triple-stranded coiled-coil of alpha-helices extends 76 A from the membrane and a globular region of antiparallel beta-sheet, which contains the receptor binding site and the variable antigenic determinants, is positioned on top of this stem. Each subunit has an unusual loop-like topology, starting at the membrane, extending 135 A distally and folding back to enter the membrane.
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            Activation of cytoplasmic dynein motility by dynactin-cargo adapter complexes.

            Cytoplasmic dynein is a molecular motor that transports a large variety of cargoes (e.g., organelles, messenger RNAs, and viruses) along microtubules over long intracellular distances. The dynactin protein complex is important for dynein activity in vivo, but its precise role has been unclear. Here, we found that purified mammalian dynein did not move processively on microtubules in vitro. However, when dynein formed a complex with dynactin and one of four different cargo-specific adapter proteins, the motor became ultraprocessive, moving for distances similar to those of native cargoes in living cells. Thus, we propose that dynein is largely inactive in the cytoplasm and that a variety of adapter proteins activate processive motility by linking dynactin to dynein only when the motor is bound to its proper cargo. Copyright © 2014, American Association for the Advancement of Science.
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              What is the total number of protein molecules per cell volume? A call to rethink some published values

              Ron Milo (2013)
              Novel methods such as mass-spectrometry enable a view of the proteomes of cells in unprecedented detail. Recently, these efforts have culminated in quantitative measurements of the number of copies per cell for most expressed proteins in organisms ranging from bacteria to mammalian cells. Here, we estimate the expected total number of proteins per unit of cell volume using known parameters related to the composition of cells such as the fraction of cell mass that is protein, and the average protein length. Using simple arguments, we estimate a range of 2–4 million proteins per cubic micron (i.e. 1 fL) in bacteria, yeast, and mammalian cells. Interestingly, we find that measured values that are reported for fission yeast and mammalian cells are often about 3–10 times lower. We discuss this apparent discrepancy and how to use the estimate as benchmark to recalibrate proteome-wide quantitative censuses or to revisit assumptions about cell composition. We estimate the expected total number of proteins per unit cell volume as 2–4 million proteins per cubic micron. Some reported values for fission yeast and mammalian cells using mass spectrometry are 3–10 times lower than these estimates. We discuss this apparent discrepancy and how to recalibrate proteome-wide quantitative censuses.
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                Author and article information

                Journal
                Bioessays
                Bioessays
                10.1002/(ISSN)1521-1878
                BIES
                Bioessays
                John Wiley and Sons Inc. (Hoboken )
                0265-9247
                1521-1878
                05 August 2016
                September 2016
                : 38
                : 9 ( doiID: 10.1002/bies.v38.9 )
                : 903-916
                Affiliations
                [ 1 ] Department of Structural and Computational BiologyMax F. Perutz Laboratories (MFPL) Vienna Biocenter (VBC) ViennaAustria
                [ 2 ] Department of Medical BiochemistryMedical University of Vienna ViennaAustria
                Author notes
                [*] [* ] Corresponding author:

                Thomas A. Leonard

                E‐mail: thomas.leonard@ 123456meduniwien.ac.at

                Article
                BIES201600062
                10.1002/bies.201600062
                5082667
                27492088
                ec7da6c9-41c1-432d-8051-561682bef804
                © 2016 The Authors BioEssays Published by WILEY Periodicals, Inc.

                This is an open access article under the terms of the Creative Commons Attribution License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.

                History
                Page count
                Pages: 14
                Funding
                Funded by: Austrian Science Fund (FWF)
                Award ID: P 28135
                Categories
                Prospects & Overview
                Prospects & Overview
                Problems & Paradigms
                Custom metadata
                2.0
                bies201600062
                September 2016
                Converter:WILEY_ML3GV2_TO_NLMPMC version:4.9.6 mode:remove_FC converted:27.10.2016

                Cell biology
                allostery,coiled‐coil,molecular ruler,molecular spacer,scaffold
                Cell biology
                allostery, coiled‐coil, molecular ruler, molecular spacer, scaffold

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