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      Two new species of Amanitasect.Phalloideae from Africa, one of which is devoid of amatoxins and phallotoxins

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          Abstract

          Abstract

          Two new species of Amanita sect. Phalloideae are described from tropical Africa (incl. Madagascar) based on both morphological and molecular (DNA sequence) data. Amanita bweyeyensis sp. nov. was collected, associated with Eucalyptus , in Rwanda, Burundi and Tanzania. It is consumed by local people and chemical analyses showed the absence of amatoxins and phallotoxins in the basidiomata. Surprisingly, molecular analysis performed on the same specimens nevertheless demonstrated the presence of the gene sequence encoding for the phallotoxin phallacidin (PHA gene, member of the MSDIN family). The second species, Amanita harkoneniana sp. nov. was collected in Tanzania and Madagascar. It is also characterised by a complete PHA gene sequence and is suspected to be deadly poisonous. Both species clustered together in a well-supported terminal clade in multilocus phylogenetic inferences (including nuclear ribosomal partial LSU and ITS-5.8S, partial tef1-α, rpb2 and β-tubulin genes), considered either individually or concatenated. This, along with the occurrence of other species in sub-Saharan Africa and their phylogenetic relationships, are briefly discussed. Macro- and microscopic descriptions, as well as pictures and line drawings, are presented for both species. An identification key to the African and Madagascan species of Amanita sect. Phalloideae is provided. The differences between the two new species and the closest Phalloideae species are discussed.

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          Extensive sampling of basidiomycete genomes demonstrates inadequacy of the white-rot/brown-rot paradigm for wood decay fungi.

          Basidiomycota (basidiomycetes) make up 32% of the described fungi and include most wood-decaying species, as well as pathogens and mutualistic symbionts. Wood-decaying basidiomycetes have typically been classified as either white rot or brown rot, based on the ability (in white rot only) to degrade lignin along with cellulose and hemicellulose. Prior genomic comparisons suggested that the two decay modes can be distinguished based on the presence or absence of ligninolytic class II peroxidases (PODs), as well as the abundance of enzymes acting directly on crystalline cellulose (reduced in brown rot). To assess the generality of the white-rot/brown-rot classification paradigm, we compared the genomes of 33 basidiomycetes, including four newly sequenced wood decayers, and performed phylogenetically informed principal-components analysis (PCA) of a broad range of gene families encoding plant biomass-degrading enzymes. The newly sequenced Botryobasidium botryosum and Jaapia argillacea genomes lack PODs but possess diverse enzymes acting on crystalline cellulose, and they group close to the model white-rot species Phanerochaete chrysosporium in the PCA. Furthermore, laboratory assays showed that both B. botryosum and J. argillacea can degrade all polymeric components of woody plant cell walls, a characteristic of white rot. We also found expansions in reducing polyketide synthase genes specific to the brown-rot fungi. Our results suggest a continuum rather than a dichotomy between the white-rot and brown-rot modes of wood decay. A more nuanced categorization of rot types is needed, based on an improved understanding of the genomics and biochemistry of wood decay.
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            DAMBE: Software Package for Data Analysis in Molecular Biology and Evolution

            X. Xia (2001)
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              Assembling the fungal tree of life: progress, classification, and evolution of subcellular traits.

              Based on an overview of progress in molecular systematics of the true fungi (Fungi/Eumycota) since 1990, little overlap was found among single-locus data matrices, which explains why no large-scale multilocus phylogenetic analysis had been undertaken to reveal deep relationships among fungi. As part of the project "Assembling the Fungal Tree of Life" (AFTOL), results of four Bayesian analyses are reported with complementary bootstrap assessment of phylogenetic confidence based on (1) a combined two-locus data set (nucSSU and nucLSU rDNA) with 558 species representing all traditionally recognized fungal phyla (Ascomycota, Basidiomycota, Chytridiomycota, Zygomycota) and the Glomeromycota, (2) a combined three-locus data set (nucSSU, nucLSU, and mitSSU rDNA) with 236 species, (3) a combined three-locus data set (nucSSU, nucLSU rDNA, and RPB2) with 157 species, and (4) a combined four-locus data set (nucSSU, nucLSU, mitSSU rDNA, and RPB2) with 103 species. Because of the lack of complementarity among single-locus data sets, the last three analyses included only members of the Ascomycota and Basidiomycota. The four-locus analysis resolved multiple deep relationships within the Ascomycota and Basidiomycota that were not revealed previously or that received only weak support in previous studies. The impact of this newly discovered phylogenetic structure on supraordinal classifications is discussed. Based on these results and reanalysis of subcellular data, current knowledge of the evolution of septal features of fungal hyphae is synthesized, and a preliminary reassessment of ascomal evolution is presented. Based on previously unpublished data and sequences from GenBank, this study provides a phylogenetic synthesis for the Fungi and a framework for future phylogenetic studies on fungi.
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                Author and article information

                Contributors
                Journal
                MycoKeys
                MycoKeys
                11
                urn:lsid:arphahub.com:pub:c004a564-9d6a-5f9f-b058-6a3815dfe9c3
                MycoKeys
                Pensoft Publishers
                1314-4057
                1314-4049
                2019
                06 June 2019
                : 53
                : 93-125
                Affiliations
                [1 ] Meise Botanic Garden, 38 Nieuwelaan, 1860 Meise, Belgium Meise Botanic Garden Meise Belgium
                [2 ] Fédération Wallonie-Bruxelles, Service Général de l’Enseignement supérieur et de la recherche scientifique, 1080 Brussels, Belgium Fédération Wallonie-Bruxelles, Service Général de l’Enseignement supérieur et de la recherche scientifique Brussels Belgium
                [3 ] Duzce University, Faculty of Medicine, Department of Pharmacology, Düzce, Turkey Duzce University Düzce Turkey
                [4 ] Ankara University, Faculty of Science, Department of Biology, Ankara, Turkey Ankara University Ankara Turkey
                Author notes
                Corresponding author: André Fraiture ( andre.fraiture@ 123456botanicgardenmeise.be )

                Academic editor: María P. Martín

                Author information
                https://orcid.org/0000-0002-8426-2133
                Article
                34560
                10.3897/mycokeys.53.34560
                6565643
                31217724
                ed334342-3dfa-4b7e-bb8a-bf883182361e
                André Fraiture, Mario Amalfi, Olivier Raspé, Ertugrul Kaya, Ilgaz Akata, Jérôme Degreef

                This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

                History
                : 15 March 2019
                : 08 May 2019
                Categories
                Research Article
                Basidiomycota
                Biodiversity & Conservation
                Biogeography
                Identification key
                Molecular systematics
                Phylogeny
                Taxonomy
                Africa

                ectomycorrhizal fungi, amanita ,phylogeny,taxonomy,mycotoxins,tropical africa,2 new species,fungi,agaricales,amanitaceae

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