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      Unregistered Biological Words Recognition by Q-Learning with Transfer Learning

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          Abstract

          Unregistered biological words recognition is the process of identification of terms that is out of vocabulary. Although many approaches have been developed, the performance approaches are not satisfactory. As the identification process can be viewed as a Markov process, we put forward a Q-learning with transfer learning algorithm to detect unregistered biological words from texts. With the Q-learning, the recognizer can attain the optimal solution of identification during the interaction with the texts and contexts. During the processing, a transfer learning approach is utilized to fully take advantage of the knowledge gained in a source task to speed up learning in a different but related target task. A mapping, required by many transfer learning, which relates features from the source task to the target task, is carried on automatically under the reinforcement learning framework. We examined the performance of three approaches with GENIA corpus and JNLPBA04 data. The proposed approach improved performance in both experiments. The precision, recall rate, and F score results of our approach surpassed those of conventional unregistered word recognizer as well as those of Q-learning approach without transfer learning.

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          Most cited references44

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          LIBSVM: A library for support vector machines

          LIBSVM is a library for Support Vector Machines (SVMs). We have been actively developing this package since the year 2000. The goal is to help users to easily apply SVM to their applications. LIBSVM has gained wide popularity in machine learning and many other areas. In this article, we present all implementation details of LIBSVM. Issues such as solving SVM optimization problems theoretical convergence multiclass classification probability estimates and parameter selection are discussed in detail.
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            Training linear SVMs in linear time

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              GENIA corpus--semantically annotated corpus for bio-textmining.

              Natural language processing (NLP) methods are regarded as being useful to raise the potential of text mining from biological literature. The lack of an extensively annotated corpus of this literature, however, causes a major bottleneck for applying NLP techniques. GENIA corpus is being developed to provide reference materials to let NLP techniques work for bio-textmining. GENIA corpus version 3.0 consisting of 2000 MEDLINE abstracts has been released with more than 400,000 words and almost 100,000 annotations for biological terms.
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                Author and article information

                Journal
                ScientificWorldJournal
                ScientificWorldJournal
                TSWJ
                The Scientific World Journal
                Hindawi Publishing Corporation
                1537-744X
                2014
                19 February 2014
                : 2014
                : 173290
                Affiliations
                1School of Computer Science and Technology, Soochow University, Suzhou 215006, China
                2Center for Systems Biology, Soochow University, Suzhou 215006, China
                Author notes

                Academic Editors: J. Shu and F. Yu

                Author information
                http://orcid.org/0000-0002-2226-2859
                http://orcid.org/0000-0002-1149-729X
                Article
                10.1155/2014/173290
                3950481
                ed8fac25-2039-4588-8949-73a3ea20c32b
                Copyright © 2014 Fei Zhu et al.

                This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

                History
                : 5 September 2013
                : 8 January 2014
                Funding
                Funded by: http://dx.doi.org/10.13039/501100001809 National Natural Science Foundation of China
                Award ID: 61303108
                Funded by: http://dx.doi.org/10.13039/501100001809 National Natural Science Foundation of China
                Award ID: 61272005
                Funded by: http://dx.doi.org/10.13039/501100001809 National Natural Science Foundation of China
                Award ID: 61373094
                Categories
                Research Article

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