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      Complete Chromosome Sequence of Carnobacterium maltaromaticum LMA 28

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          Abstract

          Within the lactic acid bacterium genus Carnobacterium, Carnobacterium maltaromaticum is one of the most frequently isolated species from natural environments and food. It potentially plays a major role in food product biopreservation. We report here on the 3.649-Mb chromosome sequence of C. maltaromaticum LMA 28, which was isolated from ripened soft cheese.

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          Carnobacterium: positive and negative effects in the environment and in foods

          Jørgen Leisner, Birgit Laursen, Hervé Prévost … (2007)
          The genus Carnobacterium contains nine species, but only C. divergens and C. maltaromaticum are frequently isolated from natural environments and foods. They are tolerant to freezing/thawing and high pressure and able to grow at low temperatures, anaerobically and with increased CO2 concentrations. They metabolize arginine and various carbohydrates, including chitin, and this may improve their survival in the environment. Carnobacterium divergens and C. maltaromaticum have been extensively studied as protective cultures in order to inhibit growth of Listeria monocytogenes in fish and meat products. Several carnobacterial bacteriocins are known, and parameters that affect their production have been described. Currently, however, no isolates are commercially applied as protective cultures. Carnobacteria can spoil chilled foods, but spoilage activity shows intraspecies and interspecies variation. The responsible spoilage metabolites are not well characterized, but branched alcohols and aldehydes play a partial role. Their production of tyramine in foods is critical for susceptible individuals, but carnobacteria are not otherwise human pathogens. Carnobacterium maltaromaticum can be a fish pathogen, although carnobacteria are also suggested as probiotic cultures for use in aquaculture. Representative genome sequences are not yet available, but would be valuable to answer questions associated with fundamental and applied aspects of this important genus.
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            An Ergatis-based prokaryotic genome annotation web server.

            Aaron Buechlein, Ram Podicheti, Chris Hemmerich … (2010)
            Ergatis is a flexible workflow management system for designing and executing complex bioinformatics pipelines. However, its complexity restricts its usage to only highly skilled bioinformaticians. We have developed a web-based prokaryotic genome annotation server, Integrative Services for Genomics Analysis (ISGA), which builds upon the Ergatis workflow system, integrates other dynamic analysis tools and provides intuitive web interfaces for biologists to customize and execute their own annotation pipelines. ISGA is designed to be installed at genomics core facilities and be used directly by biologists. ISGA is accessible at http://isga.cgb.indiana.edu/ and the system is also freely available for local installation.
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              Comparative genomics of enzymes in flavor-forming pathways from amino acids in lactic acid bacteria.

              Mengjin Liu, Roland J. Siezen, Christof Francke … (2008)
              Article 0 comments Cited 49 times – based on 0 reviews     Review now
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                Author and article information

                Journal
                Journal ID (nlm-ta): Genome Announc
                Journal ID (iso-abbrev): Genome Announc
                Journal ID (hwp): ga
                Journal ID (pmc): ga
                Journal ID (publisher-id): GA
                Title: Genome Announcements
                Publisher: American Society for Microbiology (1752 N St., N.W., Washington, DC )
                ISSN (Electronic): 2169-8287
                Publication date Collection: Jan-Feb 2013
                Publication date (Electronic): 31 January 2013
                Volume: 1
                Issue: 1
                Electronic Location Identifier: e00115-12
                Affiliations
                [a ]Université de Lorraine, Laboratoire d’Ingénierie des Biomolécules (LIBio), Vandoeuvre-lès-Nancy, France
                [b ]INRA, UMR1319 Micalis, Jouy-en-Josas, France
                [c ]AgroParisTech, UMR Micalis, Jouy-en-Josas, France
                [d ]Unité de Mathématique, Informatique et Génome, INRA, Jouy-en-Josas, France
                [e ]INRA, Nantes, France
                [f ]L’Université Nantes Angers Le Mans (L’UNAM), Oniris, UMR 1014 Secalim, Nantes, France
                [g ]National Food Institute (DTU Food), Technical University of Denmark, Kgs. Lyngby, Denmark
                [h ]Department of Veterinary Disease Biology, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark
                Author notes
                Address correspondence to Catherine Cailliez-Grimal, catherine.cailliez@ 123456univ-lorraine.fr .
                Article
                Publisher ID: genomeA00115-12
                DOI: 10.1128/genomeA.00115-12
                PMC ID: 3569318
                SO-VID: eef52bc5-df75-459e-9fbb-b716247ef3c0
                Copyright © Copyright © 2013 Cailliez-Grimal et al.
                License:

                This is an open-access article distributed under the terms of the Creative Commons Attribution 3.0 Unported license.

                History
                Date received : 8 November 2012
                Date accepted : 19 November 2012
                Page count
                Pages: 2
                Categories
                Subject: Prokaryotes
                Custom metadata
                cover-date January/February 2013
                access-type free

                ScienceOpen disciplines: Genetics
                Data availability:
                ScienceOpen disciplines: Genetics

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