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      Alluvial substrate mapping by automated texture segmentation of recreational-grade side scan sonar imagery

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          Abstract

          Side scan sonar in low-cost ‘fishfinder’ systems has become popular in aquatic ecology and sedimentology for imaging submerged riverbed sediment at coverages and resolutions sufficient to relate bed texture to grain-size. Traditional methods to map bed texture (i.e. physical samples) are relatively high-cost and low spatial coverage compared to sonar, which can continuously image several kilometers of channel in a few hours. Towards a goal of automating the classification of bed habitat features, we investigate relationships between substrates and statistical descriptors of bed textures in side scan sonar echograms of alluvial deposits. We develop a method for automated segmentation of bed textures into between two to five grain-size classes. Second-order texture statistics are used in conjunction with a Gaussian Mixture Model to classify the heterogeneous bed into small homogeneous patches of sand, gravel, and boulders with an average accuracy of 80%, 49%, and 61%, respectively. Reach-averaged proportions of these sediment types were within 3% compared to similar maps derived from multibeam sonar.

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          A Hierarchical Approach to Classifying Stream Habitat Features

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            Effects of hydraulic roughness on surface textures of gravel-bed rivers

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              Modeling river bed morphology, roughness, and surface sedimentology using high resolution terrestrial laser scanning

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                Author and article information

                Contributors
                Role: Data curationRole: Formal analysisRole: MethodologyRole: SoftwareRole: ValidationRole: VisualizationRole: Writing – original draftRole: Writing – review & editing
                Role: ConceptualizationRole: Formal analysisRole: Funding acquisitionRole: MethodologyRole: SoftwareRole: SupervisionRole: Writing – review & editing
                Role: ConceptualizationRole: Funding acquisitionRole: ResourcesRole: Writing – review & editing
                Role: Editor
                Journal
                PLoS One
                PLoS ONE
                plos
                plosone
                PLoS ONE
                Public Library of Science (San Francisco, CA USA )
                1932-6203
                2018
                14 March 2018
                : 13
                : 3
                : e0194373
                Affiliations
                [1 ] Department of Watershed Sciences, Utah State University, Logan, UT, United States of America
                [2 ] School of Earth Sciences and Environmental Sustainability, Northern Arizona University, Flagstaff, AZ, United States of America
                University of Waikato, NEW ZEALAND
                Author notes

                Competing Interests: The authors have declared that no competing interests exist.

                [¤]

                Current address: Department of Watershed Sciences, Utah State University, Logan, UT, 84322, United States of America

                Author information
                http://orcid.org/0000-0002-7587-6141
                Article
                PONE-D-17-42940
                10.1371/journal.pone.0194373
                5851640
                29538449
                efa0e6f8-9cfa-4f0b-ac36-ff7313802433
                © 2018 Hamill et al

                This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

                History
                : 7 December 2017
                : 1 March 2018
                Page count
                Figures: 11, Tables: 8, Pages: 28
                Funding
                Funded by: funder-id http://dx.doi.org/10.13039/100007200, Utah State University Research Foundation;
                Award ID: 150155
                Award Recipient :
                This work was funded by the Glen Canyon Dam Adaptive Management Program administered by the U.S. Bureau of Reclamation. The lead author (DH) and last author (JW) were supported by the U.S. Geological Survey to Utah State University (USGS Agreement G14AC00369; USU Award 150155).
                Categories
                Research Article
                Earth Sciences
                Geology
                Petrology
                Sediment
                Earth Sciences
                Geology
                Sedimentary Geology
                Sediment
                Engineering and Technology
                Remote Sensing
                Sonar
                Physical Sciences
                Mathematics
                Applied Mathematics
                Algorithms
                Research and Analysis Methods
                Simulation and Modeling
                Algorithms
                Physical Sciences
                Mathematics
                Probability Theory
                Random Variables
                Covariance
                Physical Sciences
                Physics
                Acoustics
                Physical Sciences
                Physics
                Thermodynamics
                Entropy
                Engineering and Technology
                Transportation
                Boats
                Biology and Life Sciences
                Organisms
                Eukaryota
                Animals
                Vertebrates
                Fish
                Freshwater Fish
                Custom metadata
                All of the data and scripts presented in this paper are available at https://github.com/danhamill/ss_texture_analysis (DOI: 10.5281/zenodo.820662).

                Uncategorized
                Uncategorized

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