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      TREM2 regulates purinergic receptor-mediated calcium signaling and motility in human iPSC-derived microglia

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          Abstract

          The membrane protein TREM2 (Triggering Receptor Expressed on Myeloid cells 2) regulates key microglial functions including phagocytosis and chemotaxis. Loss-of-function variants of TREM2 are associated with increased risk of Alzheimer’s disease (AD). Because abnormalities in Ca 2+ signaling have been observed in several AD models, we investigated TREM2 regulation of Ca 2+ signaling in human induced pluripotent stem cell-derived microglia (iPSC-microglia) with genetic deletion of TREM2. We found that iPSC-microglia lacking TREM2 (TREM2 KO) show exaggerated Ca 2+ signals in response to purinergic agonists, such as ADP, that shape microglial injury responses. This ADP hypersensitivity, driven by increased expression of P2Y 12 and P2Y 13 receptors, results in greater release of Ca 2+ from the endoplasmic reticulum stores, which triggers sustained Ca 2+ influx through Orai channels and alters cell motility in TREM2 KO microglia. Using iPSC-microglia expressing the genetically encoded Ca 2+ probe, Salsa6f, we found that cytosolic Ca 2+ tunes motility to a greater extent in TREM2 KO microglia. Despite showing greater overall displacement, TREM2 KO microglia exhibit reduced directional chemotaxis along ADP gradients. Accordingly, the chemotactic defect in TREM2 KO microglia was rescued by reducing cytosolic Ca 2+ using a P2Y 12 receptor antagonist. Our results show that loss of TREM2 confers a defect in microglial Ca 2+ response to purinergic signals, suggesting a window of Ca 2+ signaling for optimal microglial motility.

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          A Unique Microglia Type Associated with Restricting Development of Alzheimer's Disease.

          Alzheimer's disease (AD) is a detrimental neurodegenerative disease with no effective treatments. Due to cellular heterogeneity, defining the roles of immune cell subsets in AD onset and progression has been challenging. Using transcriptional single-cell sorting, we comprehensively map all immune populations in wild-type and AD-transgenic (Tg-AD) mouse brains. We describe a novel microglia type associated with neurodegenerative diseases (DAM) and identify markers, spatial localization, and pathways associated with these cells. Immunohistochemical staining of mice and human brain slices shows DAM with intracellular/phagocytic Aβ particles. Single-cell analysis of DAM in Tg-AD and triggering receptor expressed on myeloid cells 2 (Trem2)(-/-) Tg-AD reveals that the DAM program is activated in a two-step process. Activation is initiated in a Trem2-independent manner that involves downregulation of microglia checkpoints, followed by activation of a Trem2-dependent program. This unique microglia-type has the potential to restrict neurodegeneration, which may have important implications for future treatment of AD and other neurodegenerative diseases. VIDEO ABSTRACT.
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            An RNA-sequencing transcriptome and splicing database of glia, neurons, and vascular cells of the cerebral cortex.

            The major cell classes of the brain differ in their developmental processes, metabolism, signaling, and function. To better understand the functions and interactions of the cell types that comprise these classes, we acutely purified representative populations of neurons, astrocytes, oligodendrocyte precursor cells, newly formed oligodendrocytes, myelinating oligodendrocytes, microglia, endothelial cells, and pericytes from mouse cerebral cortex. We generated a transcriptome database for these eight cell types by RNA sequencing and used a sensitive algorithm to detect alternative splicing events in each cell type. Bioinformatic analyses identified thousands of new cell type-enriched genes and splicing isoforms that will provide novel markers for cell identification, tools for genetic manipulation, and insights into the biology of the brain. For example, our data provide clues as to how neurons and astrocytes differ in their ability to dynamically regulate glycolytic flux and lactate generation attributable to unique splicing of PKM2, the gene encoding the glycolytic enzyme pyruvate kinase. This dataset will provide a powerful new resource for understanding the development and function of the brain. To ensure the widespread distribution of these datasets, we have created a user-friendly website (http://web.stanford.edu/group/barres_lab/brain_rnaseq.html) that provides a platform for analyzing and comparing transciption and alternative splicing profiles for various cell classes in the brain. Copyright © 2014 the authors 0270-6474/14/3411929-19$15.00/0.
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              Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer’s disease risk

              Alzheimer's disease (AD) is highly heritable and recent studies have identified over 20 disease-associated genomic loci. Yet these only explain a small proportion of the genetic variance, indicating that undiscovered loci remain. Here, we performed a large genome-wide association study of clinically diagnosed AD and AD-by-proxy (71,880 cases, 383,378 controls). AD-by-proxy, based on parental diagnoses, showed strong genetic correlation with AD (rg = 0.81). Meta-analysis identified 29 risk loci, implicating 215 potential causative genes. Associated genes are strongly expressed in immune-related tissues and cell types (spleen, liver, and microglia). Gene-set analyses indicate biological mechanisms involved in lipid-related processes and degradation of amyloid precursor proteins. We show strong genetic correlations with multiple health-related outcomes, and Mendelian randomization results suggest a protective effect of cognitive ability on AD risk. These results are a step forward in identifying the genetic factors that contribute to AD risk and add novel insights into the neurobiology of AD.
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                Author and article information

                Contributors
                Role: Reviewing Editor
                Role: Senior Editor
                Journal
                eLife
                Elife
                eLife
                eLife
                eLife Sciences Publications, Ltd
                2050-084X
                22 February 2022
                2022
                : 11
                : e73021
                Affiliations
                [1 ] Department of Physiology and Biophysics, University of California, Irvine ( https://ror.org/04gyf1771) Irvine United States
                [2 ] Department of Neurobiology and Behavior, University of California, Irvine ( https://ror.org/04gyf1771) Irvine United States
                [3 ] Sue and Bill Gross Stem Cell Research Center, University of California, Irvine ( https://ror.org/04gyf1771) Irvine United States
                [4 ] UCI Institute for Memory Impairments and Neurological Disorders, University of California ( https://ror.org/04gyf1771) Irvine United States
                [5 ] Institute for Neurodegenerative Diseases, University of California, San Francisco ( https://ror.org/043mz5j54) San Francisco United States
                [6 ] Center for Advanced Sciences and Technology (CAST), University "G. d'Annunzio" of Chieti-Pescara ( https://ror.org/00qjgza05) Chieti Italy
                [7 ] Department of Neuroscience, Imaging and Clinical Sciences, University G d'Annunzio of Chieti-Pescara ( https://ror.org/00qjgza05) Chieti Italy
                [8 ] Department of Mechanical Engineering and Engineering Science, University of North Carolina ( https://ror.org/04dawnj30) Charlotte United States
                [9 ] Institute of Quantum Biophysics, Department of Biophysics, Dept of Intelligent Precision Healthcare Convergence, Sungkyunkwan University ( https://ror.org/04q78tk20) Gyeonggi-do Republic of Korea
                [10 ] Institute for Immunology, University of California, Irvine ( https://ror.org/04gyf1771) Irvine United States
                Northwestern University ( https://ror.org/000e0be47) United States
                The University of Texas at Austin ( https://ror.org/00hj54h04) United States
                Northwestern University ( https://ror.org/000e0be47) United States
                Northwestern University ( https://ror.org/000e0be47) United States
                University of Pittsburgh ( https://ror.org/01an3r305) United States
                Author notes
                [†]

                These authors contributed equally to this work.

                Author information
                https://orcid.org/0000-0002-5206-700X
                https://orcid.org/0000-0001-5368-6788
                https://orcid.org/0000-0001-9910-195X
                https://orcid.org/0000-0001-6832-5547
                https://orcid.org/0000-0002-7770-7157
                https://orcid.org/0000-0002-4987-2526
                Article
                73021
                10.7554/eLife.73021
                8906810
                35191835
                f03255df-e7f4-4190-9dc4-31591ff788f9
                © 2022, Jairaman et al

                This article is distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use and redistribution provided that the original author and source are credited.

                History
                : 13 August 2021
                : 18 February 2022
                Funding
                Funded by: FundRef http://dx.doi.org/10.13039/100000002, National Institutes of Health;
                Award ID: R01 NS14609
                Award Recipient :
                Funded by: FundRef http://dx.doi.org/10.13039/100000002, National Institutes of Health;
                Award ID: R01 AI121945
                Award Recipient :
                Funded by: FundRef http://dx.doi.org/10.13039/100000002, National Institutes of Health;
                Award ID: R01 AG048099
                Award Recipient :
                Funded by: FundRef http://dx.doi.org/10.13039/100000002, National Institutes of Health;
                Award ID: R01 AG056303
                Award Recipient :
                Funded by: FundRef http://dx.doi.org/10.13039/100000002, National Institutes of Health;
                Award ID: R01 AG055524
                Award Recipient :
                Funded by: FundRef http://dx.doi.org/10.13039/100000002, National Institutes of Health;
                Award ID: core AG066519
                Award Recipient :
                Funded by: FundRef http://dx.doi.org/10.13039/100000002, National Institutes of Health;
                Award ID: U01 AI160397
                Award Recipient :
                Funded by: FundRef http://dx.doi.org/10.13039/100000002, National Institutes of Health;
                Award ID: T32 NS082174
                Award Recipient :
                Funded by: FundRef http://dx.doi.org/10.13039/100000002, National Institutes of Health;
                Award ID: RF1DA048813
                Award Recipient :
                Funded by: The Marie Sklodowska-Curie grant agreement iMIND;
                Award ID: no. 84166
                Award Recipient :
                Funded by: FundRef http://dx.doi.org/10.13039/501100001321, National Research Foundation;
                Award ID: 2020R1A2C2010285
                Award Recipient :
                Funded by: FundRef http://dx.doi.org/10.13039/100011512, National Research Foundation;
                Award ID: 2020 M3C7A1023941
                Award Recipient :
                Funded by: FundRef http://dx.doi.org/10.13039/100011512, National Research Foundation;
                Award ID: I21SS7606036
                Award Recipient :
                Funded by: FundRef http://dx.doi.org/10.13039/100000002, National Institute of Health;
                Award ID: AG059236-01A1
                Award Recipient :
                Funded by: UCI Sue & Bill Gross Stem Cell Research Center;
                Award ID: Seed Grant
                Award Recipient :
                Funded by: Susan Scott Foundation;
                Award ID: gift
                Award Recipient :
                The funders had no role in study design, data collection and interpretation, or the decision to submit the work for publication.
                Categories
                Research Article
                Immunology and Inflammation
                Neuroscience
                Custom metadata
                Deletion of Alzheimer’s disease risk gene TREM2 augments sensitivity to the purinergic agonist ADP, leading to increased Ca 2+ influx and reduced directional migration in human induced pluripotent stem cell-derived microglia.

                Life sciences
                ipsc-derived microglia,trem2,alzheimer's disease,p2y receptor,ca2+ signaling,store-operated ca2+ entry,human

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