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      Functional Studies of Novel FOXL2 Variants in Chinese Families With Blepharophimosis–Ptosis–Epicanthus Inversus Syndrome

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          Abstract

          The blepharophimosis–ptosis–epicanthus inversus syndrome (BPES) is a rare autosomal dominant disease mainly caused by FOXL2 variants. This genetic disorder is usually characterized by eyelid malformation and ovarian dysfunction. However, no reliable genotype/phenotype correlations have been established considering the ovarian phenotype. Here, we detected 15 FOXL2 variants including nine novel ones from 7 families and 8 sporadic cases, which expanded the spectrum of FOXL2 variants and identified a potential clinical cause. Functional studies, with respect to the effect of FOXL2 on the StAR promoter, showed that non-sense variants that lead to protein truncation before the polyalanine tract and missense variants [c.307C > T; p.(Arg103Cys), c.311A > C; p.(His104Pro), c.320G > A; p.(Ser107Asn), and c.335T > A; p.(Phe112Tyr)] within the central portion of the FOXL2 forkhead domain significantly affect its suppressor activity. Such changes may explain the mechanism underlying a more severe phenotype, more likely to result in BPES type I. Furthermore, the missenses variants c.307C > T; p.(Arg103Cys), c.311A > C; p.(His104Pro), and c.320G > A; p.(Ser107Asn) were not able to transactivate OSR2, which is consistent with the eyelid malformation in these patients. The results from our cohort have expanded the spectrum of FOXL2 variants and have provided insights into genotype/phenotype correlations.

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          Most cited references35

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          Predicting the effects of coding non-synonymous variants on protein function using the SIFT algorithm.

          The effect of genetic mutation on phenotype is of significant interest in genetics. The type of genetic mutation that causes a single amino acid substitution (AAS) in a protein sequence is called a non-synonymous single nucleotide polymorphism (nsSNP). An nsSNP could potentially affect the function of the protein, subsequently altering the carrier's phenotype. This protocol describes the use of the 'Sorting Tolerant From Intolerant' (SIFT) algorithm in predicting whether an AAS affects protein function. To assess the effect of a substitution, SIFT assumes that important positions in a protein sequence have been conserved throughout evolution and therefore substitutions at these positions may affect protein function. Thus, by using sequence homology, SIFT predicts the effects of all possible substitutions at each position in the protein sequence. The protocol typically takes 5-20 min, depending on the input. SIFT is available as an online tool (http://sift.jcvi.org).
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            MutationTaster evaluates disease-causing potential of sequence alterations.

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              Amino acid difference formula to help explain protein evolution.

              A formula for diference between amino acids combines properties that correlate best with protein residue substitution frequencies: composition, polarity, and molecular volume. Substitution frequencies agree much better with overall chemical difference between exchanging residues than with minimum base changes between their codons. Correlation coefficients show that fixation of mutations between dissimilar amino acids is generally rare.
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                Author and article information

                Contributors
                Journal
                Front Genet
                Front Genet
                Front. Genet.
                Frontiers in Genetics
                Frontiers Media S.A.
                1664-8021
                16 March 2021
                2021
                : 12
                : 616112
                Affiliations
                [1] 1Department of Ophthalmology, Ninth People’s Hospital, Shanghai Jiao Tong University School of Medicine , Shanghai, China
                [2] 2Shanghai Key Laboratory of Orbital Diseases and Ocular Oncology , Shanghai, China
                Author notes

                Edited by: Enrico Baruffini, University of Parma, Italy

                Reviewed by: David Bunyan, Salisbury NHS Foundation Trust, United Kingdom; Antonis Voutetakis, Democritus University of Thrace, Greece

                *Correspondence: Yixiong Zhou, 40495610@ 123456qq.com

                These authors have contributed equally to this work

                This article was submitted to Genetics of Common and Rare Diseases, a section of the journal Frontiers in Genetics

                Article
                10.3389/fgene.2021.616112
                8007913
                33796131
                f16431bd-93af-4698-9104-d73c41aa6ef9
                Copyright © 2021 Li, Chen, Wang, Yang, Zhou, Song and Fan.

                This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

                History
                : 22 October 2020
                : 04 February 2021
                Page count
                Figures: 4, Tables: 1, Equations: 0, References: 35, Pages: 11, Words: 0
                Funding
                Funded by: National Natural Science Foundation of China 10.13039/501100001809
                Award ID: 81872339
                Award ID: 81502481
                Funded by: Shanghai Science and Technology Development Foundation 10.13039/100012543
                Award ID: 19QA1405100
                Funded by: Shanghai Rising-Star Program 10.13039/501100013105
                Categories
                Genetics
                Original Research

                Genetics
                bpes,foxl2,forkhead domain,genotype and phenotype,poi
                Genetics
                bpes, foxl2, forkhead domain, genotype and phenotype, poi

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