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      Inducible ASABF-Type Antimicrobial Peptide from the Sponge Suberites domuncula: Microbicidal and Hemolytic Activity in Vitro and Toxic Effect on Molluscs in Vivo

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          Abstract

          Since sponges, as typical filter-feeders, are exposed to a high load of attacking prokaryotic and eukaryotic organisms, they are armed with a wide arsenal of antimicrobial/cytostatic low-molecular-weight, non-proteinaceous bioactive compounds. Here we present the first sponge agent belonging to the group of ASABF-type antimicrobial peptides. The ASABF gene was identified and cloned from the demosponge Suberites domuncula. The mature peptide, with a length of 64 aa residues has a predicted pI of 9.24, and comprises the characteristic CSα β structural motif. Consequently, the S. domuncula ASABF shares high similarity with the nematode ASABFs; it is distantly related to the defensins. The recombinant peptide was found to display besides microbicidal activity, anti-fungal activity. In addition, the peptide lyses human erythrocytes. The expression of ASABF is upregulated after exposure to the apoptosis-inducing agent 2,2′-dipyridyl. During the process of apoptosis of surface tissue of S. domuncula, grazing gastropods ( Bittium sp.) are attracted by quinolinic acid which is synthesized through the kynurenine pathway by the enzyme 3-hydroxyanthranilate 3,4-dioxygenase (HAD). Finally, the gastropods are repelled from the sponge tissue by the ASABF. It is shown that the effector peptide ASABF is sequentially expressed after the induction of the HAD gene and a caspase, as a central enzyme executing apoptosis.

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          Pfam: clans, web tools and services

          Pfam is a database of protein families that currently contains 7973 entries (release 18.0). A recent development in Pfam has enabled the grouping of related families into clans. Pfam clans are described in detail, together with the new associated web pages. Improvements to the range of Pfam web tools and the first set of Pfam web services that allow programmatic access to the database and associated tools are also presented. Pfam is available on the web in the UK (), the USA (), France () and Sweden ().
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            SMART 5: domains in the context of genomes and networks

            The Simple Modular Architecture Research Tool (SMART) is an online resource () used for protein domain identification and the analysis of protein domain architectures. Many new features were implemented to make SMART more accessible to scientists from different fields. The new ‘Genomic’ mode in SMART makes it easy to analyze domain architectures in completely sequenced genomes. Domain annotation has been updated with a detailed taxonomic breakdown and a prediction of the catalytic activity for 50 SMART domains is now available, based on the presence of essential amino acids. Furthermore, intrinsically disordered protein regions can be identified and displayed. The network context is now displayed in the results page for more than 350 000 proteins, enabling easy analyses of domain interactions.
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              Prediction of the secondary structure of proteins from their amino acid sequence.

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                Author and article information

                Journal
                Mar Drugs
                MD
                Marine Drugs
                Molecular Diversity Preservation International
                1660-3397
                2011
                19 October 2011
                : 9
                : 10
                : 1969-1994
                Affiliations
                [1 ]ERC Advanced Grant Research Group at the Institute for Physiological Chemistry, University Medical Center of the Johannes Gutenberg University Mainz, Duesbergweg 6, Mainz D-55128, Germany; E-Mails: wiens@ 123456uni-mainz.de (M.W.); hschroed@ 123456uni-mainz.de (H.C.S.); korzhev@ 123456uni-mainz.de (M.K.); wxh0408@ 123456hotmail.com (X.-H.W.);
                [2 ]Rudjer Boskovic Institute, Center for Marine Research, Giordano Paliaga 5, Rovinj HR-52210, Croatia; E-Mail: batel@ 123456cim.irb.hr
                Author notes
                [* ]Author to whom correspondence should be addressed; E-Mail: wmueller@ 123456uni-mainz.de ; Tel.: +49-611-3925910; Fax: +49-611-3925243.
                Article
                marinedrugs-09-01969
                10.3390/md9101969
                3210614
                22073005
                f1e69b42-2522-47ca-9c3d-e024e5769baa
                © 2011 by the authors; licensee MDPI, Basel, Switzerland

                This article is an open-access article distributed under the terms and conditions of the Creative Commons Attribution license ( http://creativecommons.org/licenses/by/3.0/).

                History
                : 28 July 2011
                : 26 September 2011
                : 08 October 2011
                Categories
                Article

                Pharmacology & Pharmaceutical medicine
                apoptosis,asabf,antimicrobial peptides,suberites domuncula,sponges,bittium sp

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