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      Transcriptomic Evidence That Longevity of Acquired Plastids in the Photosynthetic Slugs Elysia timida and Plakobranchus ocellatus Does Not Entail Lateral Transfer of Algal Nuclear Genes

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          Abstract

          Sacoglossan sea slugs are unique in the animal kingdom in that they sequester and maintain active plastids that they acquire from the siphonaceous algae upon which they feed, making the animals photosynthetic. Although most sacoglossan species digest their freshly ingested plastids within hours, four species from the family Plakobranchidae retain their stolen plastids (kleptoplasts) in a photosynthetically active state on timescales of weeks to months. The molecular basis of plastid maintenance within the cytosol of digestive gland cells in these photosynthetic metazoans is yet unknown but is widely thought to involve gene transfer from the algal food source to the slugs based upon previous investigations of single genes. Indeed, normal plastid development requires hundreds of nuclear-encoded proteins, with protein turnover in photosystem II in particular known to be rapid under various conditions. Moreover, only algal plastids, not the algal nuclei, are sequestered by the animals during feeding. If algal nuclear genes are transferred to the animal either during feeding or in the germ line, and if they are expressed, then they should be readily detectable with deep-sequencing methods. We have sequenced expressed mRNAs from actively photosynthesizing, starved individuals of two photosynthetic sea slug species, Plakobranchus ocellatus Van Hasselt, 1824 and Elysia timida Risso, 1818. We find that nuclear-encoded, algal-derived genes specific to photosynthetic function are expressed neither in P. ocellatus nor in E. timida. Despite their dramatic plastid longevity, these photosynthetic sacoglossan slugs do not express genes acquired from algal nuclei in order to maintain plastid function.

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          Most cited references42

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          Horizontal gene transfer in eukaryotic evolution.

          Horizontal gene transfer (HGT; also known as lateral gene transfer) has had an important role in eukaryotic genome evolution, but its importance is often overshadowed by the greater prevalence and our more advanced understanding of gene transfer in prokaryotes. Recurrent endosymbioses and the generally poor sampling of most nuclear genes from diverse lineages have also complicated the search for transferred genes. Nevertheless, the number of well-supported cases of transfer from both prokaryotes and eukaryotes, many with significant functional implications, is now expanding rapidly. Major recent trends include the important role of HGT in adaptation to certain specialized niches and the highly variable impact of HGT in different lineages.
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            Identification of prokaryotic and eukaryotic signal peptides and prediction of their cleavage sites

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              Identification of prokaryotic and eukaryotic signal peptides and prediction of their cleavage sites.

              We have developed a new method for the identification of signal peptides and their cleavage sites based on neural networks trained on separate sets of prokaryotic and eukaryotic sequence. The method performs significantly better than previous prediction schemes and can easily be applied on genome-wide data sets. Discrimination between cleaved signal peptides and uncleaved N-terminal signal-anchor sequences is also possible, though with lower precision. Predictions can be made on a publicly available WWW server.
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                Author and article information

                Journal
                Mol Biol Evol
                molbiolevol
                molbev
                Molecular Biology and Evolution
                Oxford University Press
                0737-4038
                1537-1719
                January 2011
                09 September 2010
                09 September 2010
                : 28
                : 1
                : 699-706
                Affiliations
                [1 ]Zoologisches Forschungsmuseum Alexander Koenig, Bonn, Germany
                [2 ]Institut für Botanik III, Heinrich Heine Universität Düsseldorf, Düsseldorf, Germany
                [3 ]Z.E. Elektronenmikroskopie, Universität Ulm, Ulm, Germany
                [4 ]Institut für Ökologie, Evolution und Diversität, Goethe-Universität Frankfurt, Frankfurt am Main, Germany
                Author notes
                [* ] Corresponding author: E-mail: hwaegele@ 123456evolution.uni-bonn.de .

                Associate editor: Dan Graur

                Article
                10.1093/molbev/msq239
                3002249
                20829345
                f22b9ceb-1f9e-4fbd-8a47-c0c390688548
                © The Author(s) 2010. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution.

                This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License ( http://creativecommons.org/licenses/by-nc/2.5), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.

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                Categories
                Research Articles

                Molecular biology
                sacoglossa,est analyses,plastid evolution,lateral gene transfer,plakobranchus,endosymbiosis,elysia,photosynthesis

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