12
views
0
recommends
+1 Recommend
0 collections
    0
    shares
      • Record: found
      • Abstract: found
      • Article: found
      Is Open Access

      Dynamics of adsorbed polymers on attractive homogeneous surfaces

      research-article
      1 , a , 1 , 2
      Scientific Reports
      Nature Publishing Group

      Read this article at

      Bookmark
          There is no author summary for this article yet. Authors can add summaries to their articles on ScienceOpen to make them more accessible to a non-specialist audience.

          Abstract

          Dynamic behaviors of polymer chains adsorbed on an attractive, homogeneous surface are studied by using dynamic Monte Carlo simulations. The translational diffusion coefficient D xy parallel to the surface decreases as the intra-polymer attraction strength E PP or the polymer-surface attraction strength E PS increases. The rotational relaxation time τ R increases with E PS, but the dependence of τ R on E PP is dependent on the adsorption state of the polymer. We find that τ R decreases with increasing E PP for a partially adsorbed polymer but it increases with E PP for a fully adsorbed polymer. Scaling relations D xy ~  N −α and τ R ~  N β are found for long polymers. The scaling exponent α is independent of E PS for long polymers but increases with E PP from α = 1.06 at E PP = 0. While β ≈ 2.7 is also roughly independent of E PS for the adsorbed polymer at E PP = 0, but β increases with E PS at E PP > 0. Moreover, we find that β always decreases with increasing E PP. Our results reveal different effects of the attractive surface on the diffusion and rotation of adsorbed polymers.

          Related collections

          Most cited references19

          • Record: found
          • Abstract: found
          • Article: not found

          Entropy-driven spatial organization of highly confined polymers: lessons for the bacterial chromosome.

          Despite recent progress in visualization experiments, the mechanism underlying chromosome segregation in bacteria still remains elusive. Here we address a basic physical issue associated with bacterial chromosome segregation, namely the spatial organization of highly confined, self-avoiding polymers (of nontrivial topology) in a rod-shaped cell-like geometry. Through computer simulations, we present evidence that, under strong confinement conditions, topologically distinct domains of a polymer complex effectively repel each other to maximize their conformational entropy, suggesting that duplicated circular chromosomes could partition spontaneously. This mechanism not only is able to account for the spatial separation per se but also captures the major features of the spatiotemporal organization of the duplicating chromosomes observed in Escherichia coli and Caulobacter crescentus.
            Bookmark
            • Record: found
            • Abstract: found
            • Article: not found

            Diffusion of macromolecules in agarose gels: comparison of linear and globular configurations.

            The diffusion coefficients (D) of different types of macromolecules (proteins, dextrans, polymer beads, and DNA) were measured by fluorescence recovery after photobleaching (FRAP) both in solution and in 2% agarose gels to compare transport properties of these macromolecules. Diffusion measurements were conducted with concentrations low enough to avoid macromolecular interactions. For gel measurements, diffusion data were fitted according to different theories: polymer chains and spherical macromolecules were analyzed separately. As chain length increases, diffusion coefficients of DNA show a clear shift from a Rouse-like behavior (DG congruent with N0-0.5) to a reptational behavior (DG congruent with N0-2.0). The pore size, a, of a 2% agarose gel cast in a 0.1 M PBS solution was estimated. Diffusion coefficients of the proteins and the polymer beads were analyzed with the Ogston model and the effective medium model permitting the estimation of an agarose gel fiber radius and hydraulic permeability of the gels. Not only did flexible macromolecules exhibit greater mobility in the gel than did comparable-size rigid spherical particles, they also proved to be a more useful probe of available space between fibers.
              Bookmark
              • Record: found
              • Abstract: found
              • Article: not found

              Single-polymer dynamics under constraints: scaling theory and computer experiment

              The relaxation, diffusion and translocation dynamics of single linear polymer chains in confinement is briefly reviewed with emphasis on the comparison between theoretical scaling predictions and observations from experiment or, most frequently, from computer simulations. Besides cylindrical, spherical and slit-like constraints, related problems such as the chain dynamics in a random medium and the translocation dynamics through a nanopore are also considered. Another particular kind of confinement is imposed by polymer adsorption on attractive surfaces or selective interfaces--a short overview of single-chain dynamics is also contained in this survey. While both theory and numerical experiments consider predominantly coarse-grained models of self-avoiding linear chain molecules with typically Rouse dynamics, we also note some recent studies which examine the impact of hydrodynamic interactions on polymer dynamics in confinement. In all of the aforementioned cases we focus mainly on the consequences of imposed geometric restrictions on single-chain dynamics and try to check our degree of understanding by assessing the agreement between theoretical predictions and observations.
                Bookmark

                Author and article information

                Journal
                Sci Rep
                Sci Rep
                Scientific Reports
                Nature Publishing Group
                2045-2322
                16 November 2016
                2016
                : 6
                : 37156
                Affiliations
                [1 ]Department of Physics, Zhejiang University , Hangzhou 310027, China
                [2 ]Collaborative Innovation Center of Advanced Microstructures , Nanjing, China
                Author notes
                Article
                srep37156
                10.1038/srep37156
                5111053
                27849002
                f291afdb-d3bf-416a-a37f-c44d688048ac
                Copyright © 2016, The Author(s)

                This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/

                History
                : 11 July 2016
                : 25 October 2016
                Categories
                Article

                Uncategorized
                Uncategorized

                Comments

                Comment on this article