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      RAB39B-mediated trafficking of the GluA2-AMPAR subunit controls dendritic spine maturation and intellectual disability-related behaviour

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          Abstract

          Mutations in the RAB39B gene cause X-linked intellectual disability (XLID), comorbid with autism spectrum disorders or early Parkinson’s disease. One of the functions of the neuronal small GTPase RAB39B is to drive GluA2/GluA3 α-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid receptor (AMPAR) maturation and trafficking, determining AMPAR subunit composition at glutamatergic postsynaptic neuronal terminals. Taking advantage of the Rab39b knockout murine model, we show that a lack of RAB39B affects neuronal dendritic spine refinement, prompting a more Ca 2+-permeable and excitable synaptic network, which correlates with an immature spine arrangement and behavioural and cognitive alterations in adult mice. The persistence of immature circuits is triggered by increased hypermobility of the spine, which is restored by the Ca 2+-permeable AMPAR antagonist NASPM. Together, these data confirm that RAB39B controls AMPAR trafficking, which in turn plays a pivotal role in neuronal dendritic spine remodelling and that targeting Ca 2+-permeable AMPARs may highlight future pharmaceutical interventions for RAB39B-associated disease conditions.

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          Synaptic pruning by microglia is necessary for normal brain development.

          Microglia are highly motile phagocytic cells that infiltrate and take up residence in the developing brain, where they are thought to provide a surveillance and scavenging function. However, although microglia have been shown to engulf and clear damaged cellular debris after brain insult, it remains less clear what role microglia play in the uninjured brain. Here, we show that microglia actively engulf synaptic material and play a major role in synaptic pruning during postnatal development in mice. These findings link microglia surveillance to synaptic maturation and suggest that deficits in microglia function may contribute to synaptic abnormalities seen in some neurodevelopmental disorders.
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            CRISPR-assisted editing of bacterial genomes

            The targeting of nucleases to specific DNA sequences facilitates genome editing. Recent work demonstrated that the CRISPR-associated (Cas) nuclease Cas9 can be targeted to sequences in vitro simply by modifying a short7 CRISPR RNA (crRNA) guide. Here we use this CRISPR-Cas system to introduce marker-free mutations in Streptococcus pneumoniae and Escherichia coli. The approach involves re-programming Cas9 by using a crRNA complementary to a target chromosomal locus and introducing a template DNA harboring a desired mutation and an altered crRNA recognition site for recombination with the target locus. We exhaustively analyze Cas9 target requirements to define the range of targetable sequences and show strategies for editing sites that do not meet these requirements. Alone or together with recombineering, CRISPR assisted editing induces recombination at the targeted locus and kills non-edited cells leading to a recovery of close to a 100% of edited cells. Multiple crRNA can be used to modify several loci simultaneously. Our results show that CRISPR-mediated genome editing only requires programming of the crRNA and template sequences and thus constitutes a useful tool for genetic engineering.
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              CCTop: An Intuitive, Flexible and Reliable CRISPR/Cas9 Target Prediction Tool

              Engineering of the CRISPR/Cas9 system has opened a plethora of new opportunities for site-directed mutagenesis and targeted genome modification. Fundamental to this is a stretch of twenty nucleotides at the 5’ end of a guide RNA that provides specificity to the bound Cas9 endonuclease. Since a sequence of twenty nucleotides can occur multiple times in a given genome and some mismatches seem to be accepted by the CRISPR/Cas9 complex, an efficient and reliable in silico selection and evaluation of the targeting site is key prerequisite for the experimental success. Here we present the CRISPR/Cas9 target online predictor (CCTop, http://crispr.cos.uni-heidelberg.de) to overcome limitations of already available tools. CCTop provides an intuitive user interface with reasonable default parameters that can easily be tuned by the user. From a given query sequence, CCTop identifies and ranks all candidate sgRNA target sites according to their off-target quality and displays full documentation. CCTop was experimentally validated for gene inactivation, non-homologous end-joining as well as homology directed repair. Thus, CCTop provides the bench biologist with a tool for the rapid and efficient identification of high quality target sites.
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                Author and article information

                Contributors
                dadamo.patrizia@hsr.it
                Journal
                Mol Psychiatry
                Mol Psychiatry
                Molecular Psychiatry
                Nature Publishing Group UK (London )
                1359-4184
                1476-5578
                25 May 2021
                25 May 2021
                2021
                : 26
                : 11
                : 6531-6549
                Affiliations
                [1 ]GRID grid.18887.3e, ISNI 0000000417581884, Neuroscience Division, Unit of molecular genetics of intellectual disability, , IRCCS San Raffaele Scientific Institute, ; Milan, Italy
                [2 ]GRID grid.8591.5, ISNI 0000 0001 2322 4988, Department of Basic Neurosciences, , University of Geneva, ; Geneva, Switzerland
                [3 ]GRID grid.18887.3e, ISNI 0000000417581884, Preclinical Imaging Facility, Experimental Imaging Center (EIC), , IRCCS San Raffaele Scientific Institute, ; Milan, Italy
                [4 ]GRID grid.5326.2, ISNI 0000 0001 1940 4177, Institute of Bioimaging and Physiology, , CNR, ; Segrate (MI), Italy
                [5 ]GRID grid.18887.3e, ISNI 0000000417581884, Experimental Imaging Center (EIC), , IRCCS San Raffaele Scientific Institute, ; Milan, Italy
                [6 ]GRID grid.7563.7, ISNI 0000 0001 2174 1754, PhD Program in Neuroscience, , University of Milano - Bicocca, ; Monza, Italy
                [7 ]GRID grid.7563.7, ISNI 0000 0001 2174 1754, Medicine and Surgery Department, , University of Milano - Bicocca, ; Monza (MB), Italy
                Author information
                http://orcid.org/0000-0003-0392-0905
                http://orcid.org/0000-0002-2202-8982
                http://orcid.org/0000-0002-3079-3932
                http://orcid.org/0000-0003-0498-1478
                http://orcid.org/0000-0002-2771-9387
                http://orcid.org/0000-0002-6774-6275
                http://orcid.org/0000-0002-0312-5541
                Article
                1155
                10.1038/s41380-021-01155-5
                8760075
                34035473
                f2c126c8-1784-4fd8-84e4-bdd444360703
                © The Author(s) 2021

                Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

                History
                : 14 May 2020
                : 19 April 2021
                : 4 May 2021
                Funding
                Funded by: FundRef https://doi.org/10.13039/501100003196, Ministero della Salute (Ministry of Health, Italy);
                Award ID: RF-2013-02355326
                Award Recipient :
                Categories
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                © The Author(s), under exclusive licence to Springer Nature Limited 2021

                Molecular medicine
                neuroscience,biological techniques
                Molecular medicine
                neuroscience, biological techniques

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