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      A starting guide to root ecology: strengthening ecological concepts and standardising root classification, sampling, processing and trait measurements

      review-article
      1 , 2 , , 3 , 4 , 5 , 6 , 1 , 7 , 8 , 9 , 10 , 9 , 11 , 12 , 13 , 14 , 15 , 16 , 17 , 1 , 18 , 19 , 20 , 21 , 22 , 23 , 2 , 24 , 25 , 26 , 27 , 28 , 29 , 30 , 1 , 31 , 32 , 33 , 34 , 35 , 36 , 37 , 38 , 39 , 40 , 41
      The New Phytologist
      John Wiley and Sons Inc.
      below‐ground ecology, handbook, plant root functions, protocol, root classification, root ecology, root traits, trait measurements

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          Summary

          In the context of a recent massive increase in research on plant root functions and their impact on the environment, root ecologists currently face many important challenges to keep on generating cutting‐edge, meaningful and integrated knowledge. Consideration of the below‐ground components in plant and ecosystem studies has been consistently called for in recent decades, but methodology is disparate and sometimes inappropriate. This handbook, based on the collective effort of a large team of experts, will improve trait comparisons across studies and integration of information across databases by providing standardised methods and controlled vocabularies. It is meant to be used not only as starting point by students and scientists who desire working on below‐ground ecosystems, but also by experts for consolidating and broadening their views on multiple aspects of root ecology. Beyond the classical compilation of measurement protocols, we have synthesised recommendations from the literature to provide key background knowledge useful for: (1) defining below‐ground plant entities and giving keys for their meaningful dissection, classification and naming beyond the classical fine‐root vs coarse‐root approach; (2) considering the specificity of root research to produce sound laboratory and field data; (3) describing typical, but overlooked steps for studying roots (e.g. root handling, cleaning and storage); and (4) gathering metadata necessary for the interpretation of results and their reuse. Most importantly, all root traits have been introduced with some degree of ecological context that will be a foundation for understanding their ecological meaning, their typical use and uncertainties, and some methodological and conceptual perspectives for future research. Considering all of this, we urge readers not to solely extract protocol recommendations for trait measurements from this work, but to take a moment to read and reflect on the extensive information contained in this broader guide to root ecology, including sections I–VII and the many introductions to each section and root trait description. Finally, it is critical to understand that a major aim of this guide is to help break down barriers between the many subdisciplines of root ecology and ecophysiology, broaden researchers’ views on the multiple aspects of root study and create favourable conditions for the inception of comprehensive experiments on the role of roots in plant and ecosystem functioning.

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                Author and article information

                Contributors
                gregoire.freschet@sete.cnrs.fr
                Journal
                New Phytol
                New Phytol
                10.1111/(ISSN)1469-8137
                NPH
                The New Phytologist
                John Wiley and Sons Inc. (Hoboken )
                0028-646X
                1469-8137
                05 October 2021
                November 2021
                : 232
                : 3 ( doiID: 10.1111/nph.v232.3 )
                : 973-1122
                Affiliations
                [ 1 ] CEFE Univ Montpellier, CNRS, EPHE, IRD 1919 route de Mende Montpellier 34293 France
                [ 2 ] Station d’Ecologie Théorique et Expérimentale CNRS 2 route du CNRS 09200 Moulis France
                [ 3 ] UR 1115 PSH Centre PACA, site Agroparc INRAE 84914 Avignon cedex 9 France
                [ 4 ] Environmental Sciences Division and Climate Change Science Institute Oak Ridge National Laboratory Oak Ridge TN 37831 USA
                [ 5 ] USDA‐ARS Water Management Research Unit 2150 Centre Avenue, Bldg D, Suite 320 Fort Collins CO 80526 USA
                [ 6 ] Department of Forest and Soil Sciences University of Natural Resources and Life Sciences Vienna 1190 Austria
                [ 7 ] Department of Functional Ecology Institute of Botany CAS Dukelska 135 37901 Trebon Czech Republic
                [ 8 ] Institute of Dendrology Polish Academy of Sciences Parkowa 5 62‐035 Kórnik Poland
                [ 9 ] Plant Sciences (IBG‐2) Forschungszentrum Jülich GmbH D‐52425 Jülich Germany
                [ 10 ] Department of Biological Sciences Macquarie University North Ryde NSW 2109 Australia
                [ 11 ] Department of Plant Sciences The Pennsylvania State University University Park PA 16802 USA
                [ 12 ] Department of General Botany Institute of Experimental Biology Faculty of Biology Adam Mickiewicz University Uniwersytetu Poznańskiego 6 61-614 Poznań Poland
                [ 13 ] The James Hutton Institute Invergowrie, Dundee, DD2 5DA UK
                [ 14 ] School of Science and Engineering University of Dundee Dundee, DD1 4HN UK
                [ 15 ] Noble Research Institute, LLC 2510 Sam Noble Parkway Ardmore OK 73401 USA
                [ 16 ] Forest Soils and Biogeochemistry Swiss Federal Research Institute WSL Zürcherstr. 111 8903 Birmensdorf Switzerland
                [ 17 ] Department of Ecological Science Faculty of Science Vrije Universiteit Amsterdam De Boelelaan 1085 Amsterdam 1081 HV the Netherlands
                [ 18 ] Forest Dynamics Swiss Federal Research Institute WSL Zürcherstr. 111 8903 Birmensdorf Switzerland
                [ 19 ] Institute of Terrestrial Ecosystems ETH Zurich 8092 Zurich Switzerland
                [ 20 ] Department of Ecology, Evolution and Behavior University of Minnesota St Paul MN 55108 USA
                [ 21 ] Functional Forest Ecology University of Hamburg Haidkrugsweg 1 22885 Barsbütel Germany
                [ 22 ] Plant Ecology and Nature Conservation Group Department of Environmental Sciences Wageningen University and Research PO Box 47 6700 AA Wageningen the Netherlands
                [ 23 ] Université Clermont Auvergne INRAE VetAgro Sup UREP 63000 Clermont-Ferrand France
                [ 24 ] Senckenberg Biodiversity and Climate Research Centre (BiK-F) Senckenberganlage 25 60325 Frankfurt am Main Germany
                [ 25 ] Laurentian University 935 Ramsey Lake Road Sudbury ON P3E 2C6 Canada
                [ 26 ] Geobotany Faculty of Biology University of Freiburg Schänzlestr. 1 79104 Freiburg Germany
                [ 27 ] Environmental Biology Department Institute of Environmental Sciences CML Leiden University Leiden 2300 RA the Netherlands
                [ 28 ] INRAE AMAP CIRAD, IRD CNRS University of Montpellier Montpellier 34000 France
                [ 29 ] Institute of Applied Ecology Chinese Academy of Sciences Shenyang 110016 China
                [ 30 ] International Center for Tropical Botany Department of Biological Sciences Florida International University Miami FL 33199 USA
                [ 31 ] Systematic Botany and Functional Biodiversity Institute of Biology Leipzig University Johannisallee 21-23 Leipzig 04103 Germany
                [ 32 ] Odum School of Ecology University of Georgia 140 E. Green Street Athens GA 30602 USA
                [ 33 ] Biosciences Division and Center for Bioenergy Innovation Oak Ridge National Laboratory Oak Ridge TN 37831 USA
                [ 34 ] School of Geography and Priestley International Centre for Climate University of Leeds Leeds LS2 9JT UK
                [ 35 ] Cary Institute of Ecosystem Studies Millbrook NY 12545 USA
                [ 36 ] Department of Botany Institute of Biological Sciences Federal University of Goiás 19 74690-900 Goiânia, Goiás Brazil
                [ 37 ] School of Biological Sciences The University of Western Australia 35 Stirling Highway Crawley (Perth) WA 6009 Australia
                [ 38 ] School of Biological Sciences The University of Western Australia Crawley (Perth) WA Australia
                [ 39 ] Environmental Sciences Division and Climate Change Science Institute Oak Ridge National Laboratory Oak Ridge TN 37831 USA
                [ 40 ] Department of Plant and Environmental Sciences Clemson University Clemson SC 29634 USA
                [ 41 ] Center for Tree Science Morton Arboretum, 4100 Illinois Rt. 53 Lisle IL 60532 USA
                Author notes
                [*] [* ] Author for correspondence:

                Grégoire T. Freschet

                Email: gregoire.freschet@ 123456sete.cnrs.fr

                Author information
                https://orcid.org/0000-0002-8830-3860
                https://orcid.org/0000-0002-2476-6401
                https://orcid.org/0000-0001-8293-3450
                https://orcid.org/0000-0002-1674-4595
                https://orcid.org/0000-0001-8098-0616
                https://orcid.org/0000-0003-1320-9770
                https://orcid.org/0000-0003-0123-3263
                https://orcid.org/0000-0002-7352-5786
                https://orcid.org/0000-0001-9900-2433
                https://orcid.org/0000-0002-5222-6648
                https://orcid.org/0000-0001-5472-3077
                https://orcid.org/0000-0001-6115-9670
                https://orcid.org/0000-0003-3436-995X
                https://orcid.org/0000-0002-1910-9589
                https://orcid.org/0000-0001-6500-7519
                https://orcid.org/0000-0002-3775-0716
                https://orcid.org/0000-0003-4523-4145
                https://orcid.org/0000-0002-9495-9508
                https://orcid.org/0000-0001-9566-590X
                https://orcid.org/0000-0002-9584-2109
                https://orcid.org/0000-0002-7327-7647
                https://orcid.org/0000-0002-6994-2501
                https://orcid.org/0000-0001-6242-603X
                https://orcid.org/0000-0002-6143-0317
                https://orcid.org/0000-0002-1995-9479
                https://orcid.org/0000-0003-1285-6490
                https://orcid.org/0000-0002-4118-2272
                https://orcid.org/0000-0002-2188-551X
                https://orcid.org/0000-0001-6866-0804
                https://orcid.org/0000-0002-8300-5215
                Article
                NPH17572
                10.1111/nph.17572
                8518129
                34608637
                f2f337bc-b2e8-4076-a991-e34735d3c372
                © 2021 The Authors. New Phytologist © 2021 New Phytologist Foundation

                This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.

                History
                : 24 September 2019
                : 22 March 2021
                Page count
                Figures: 31, Tables: 5, Pages: 150, Words: 155634
                Funding
                Funded by: Laboratoires d’Excellences (LABEX) TULIP
                Award ID: ANR‐10‐LABX‐41
                Funded by: Narodowe Centrum Nauki , doi 10.13039/501100004281;
                Award ID: 2012/07/E/NZ9/00194
                Funded by: Volkswagen Foundation , doi 10.13039/501100001663;
                Award ID: 11‐76251‐ 99‐34/13 (ZN 2928)
                Funded by: Natural Environment Research Council , doi 10.13039/501100000270;
                Award ID: NE/ M019497/1
                Award ID: NE/N012542/1
                Funded by: Grantová Agentura České Republiky , doi 10.13039/501100001824;
                Award ID: GA 19‐13103S
                Funded by: British Council , doi 10.13039/501100000308;
                Award ID: 275556724
                Funded by: Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung , doi 10.13039/501100001711;
                Award ID: 31003A_159866
                Funded by: Deutsche Forschungsgemeinschaft , doi 10.13039/501100001659;
                Award ID: ME 4156/2‐1
                Funded by: K.C. Wong Education Foundation and Key Research Program of Frontier Sciences of the Chinese Academy of Sciences
                Award ID: QYZDB‐SSW‐DQC002
                Funded by: USDA‐ARS NP211
                Award ID: project 3012‐13000‐010‐00D
                Funded by: Institute of Dendrology of the Polish Academy of Sciences
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                Custom metadata
                2.0
                November 2021
                Converter:WILEY_ML3GV2_TO_JATSPMC version:6.0.8 mode:remove_FC converted:15.10.2021

                Plant science & Botany
                below‐ground ecology,handbook,plant root functions,protocol,root classification,root ecology,root traits,trait measurements

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