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      In Silico Exploration of Aryl Halides Analogues as Checkpoint Kinase 1 Inhibitors by Using 3D QSAR, Molecular Docking Study, and ADMET Screening

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          Abstract

          Purpose: In this review, a set of aryl halides analogs were identified as potent checkpoint kinase 1 (Chk1) inhibitors through a series of computer-aided drug design processes, to develop models with good predictive ability, highlight the important interactions between the ligand and the Chk1 receptor protein and determine properties of the new proposed drugs as Chk1 inhibitors agents.

          Methods: Three-dimensional quantitative structure–activity relationship (3D-QSAR) modeling, molecular docking and absorption, distribution, metabolism, excretion and toxicity (ADMET) approaches are used to determine structure activity relationship and confirm the stable conformation on the receptor pocket.

          Results: The statistical analysis results of comparative -molecular field analysis (CoMFA) and comparative molecular similarity indices analysis (CoMSIA) models that employed for a training set of 24 compounds gives reliable values of Q 2 (0.70 and 0.94, respectively) and R 2 (0.68 and 0.96, respectively).

          Conclusion: Computer–aided drug design tools used to develop models that possess good predictive ability, and to determine the stability of the observed and predicted molecules in the receptor pocket, also in silico of pharmacokinetic (ADMET) results shows good properties and bioavailability for these new proposed Chk1 inhibitors agents.

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          Most cited references20

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          Comparative molecular field analysis (CoMFA). 1. Effect of shape on binding of steroids to carrier proteins.

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            Validation of the general purpose tripos 5.2 force field

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              Molecular similarity indices in a comparative analysis (CoMSIA) of drug molecules to correlate and predict their biological activity.

              An alternative approach is reported to compute property fields based on similarity indices of drug molecules that have been brought into a common alignment. The fields of different physicochemical properties use a Gaussian-type distance dependence, and no singularities occur at the atomic positions. Accordingly, no arbitrary definitions of cutoff limits and deficiencies due to different slopes of the fields are encountered. The fields are evaluated by a PLS analysis similar to the CoMFA formalism. Two data sets of steroids binding to the corticosteroid-binding-globulin and thermolysin inhibitors were analyzed in terms of the conventional CoMFA method (Lennard-Jones and Coulomb potential fields) and the new comparative molecular similarity indices analysis (CoMSIA). Models of comparative statistical significance were obtained. Field contribution maps were produced for the different models. Due to cutoff settings in the CoMFA fields and the steepness of the potentials close to the molecular surface, the CoMFA maps are often rather fragmentary and not contiguously connected. This makes their interpretation difficult. The maps obtained by the new CoMSIA approach are superior and easier to interpret. Whereas the CoMFA maps denote regions apart from the molecules where interactions with a putative environment are to be expected, the CoMSIA maps highlight those regions within the area occupied by the ligand skeletons that require a particular physicochemical property important for activity. This is a more significant guide to trace the features that really matter especially with respect to the design of novel compounds.
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                Author and article information

                Journal
                Adv Pharm Bull
                Adv Pharm Bull
                Adv Pharm Bull
                APB
                TBZMED
                Advanced Pharmaceutical Bulletin
                Tabriz University of Medical Sciences
                2228-5881
                2251-7308
                February 2019
                21 February 2019
                : 9
                : 1
                : 84-92
                Affiliations
                1Faculty of Science, Moulay Ismail University, Meknes, Morocco.
                2EST, Moulay Ismail University, Meknes, Morocco.
                Author notes
                [* ] Corresponding Author: Adib Ghaleb, Tel: +212658626168, Email: adib.ghaleb@ 123456gmail.com
                Author information
                https://orcid.org/0000-0002-0243-342X
                https://orcid.org/0000-0002-9123-5504
                https://orcid.org/0000-0002-8901-047X
                https://orcid.org/0000-0001-6707-9057
                Article
                10.15171/apb.2019.011
                6468235
                f33eae97-cb53-4bfd-a6f9-8e58b2ba7111
                ©2019 The Authors.

                This is an Open Access article distributed under the terms of the Creative Commons Attribution (CC BY), which permits unrestricted use, distribution, and reproduction in any medium, as long as the original authors and source are cited. No permission is required from the authors or the publishers.

                History
                : 22 April 2018
                : 17 November 2018
                : 20 December 2018
                Page count
                Figures: 7, Tables: 7, References: 33, Pages: 9
                Categories
                Research Article

                3d-qsar,molecular-docking,in silico admet,chk1 inhibitors,aryl halides

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