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      An Algorithm for Nonparametric Estimation of a Multivariate Mixing Distribution with Applications to Population Pharmacokinetics

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          Abstract

          Population pharmacokinetic (PK) modeling has become a cornerstone of drug development and optimal patient dosing. This approach offers great benefits for datasets with sparse sampling, such as in pediatric patients, and can describe between-patient variability. While most current algorithms assume normal or log-normal distributions for PK parameters, we present a mathematically consistent nonparametric maximum likelihood (NPML) method for estimating multivariate mixing distributions without any assumption about the shape of the distribution. This approach can handle distributions with any shape for all PK parameters. It is shown in convexity theory that the NPML estimator is discrete, meaning that it has finite number of points with nonzero probability. In fact, there are at most N points where N is the number of observed subjects. The original infinite NPML problem then becomes the finite dimensional problem of finding the location and probability of the support points. In the simplest case, each point essentially represents the set of PK parameters for one patient. The probability of the points is found by a primal-dual interior-point method; the location of the support points is found by an adaptive grid method. Our method is able to handle high-dimensional and complex multivariate mixture models. An important application is discussed for the problem of population pharmacokinetics and a nontrivial example is treated. Our algorithm has been successfully applied in hundreds of published pharmacometric studies. In addition to population pharmacokinetics, this research also applies to empirical Bayes estimation and many other areas of applied mathematics. Thereby, this approach presents an important addition to the pharmacometric toolbox for drug development and optimal patient dosing.

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          Accurate detection of outliers and subpopulations with Pmetrics, a nonparametric and parametric pharmacometric modeling and simulation package for R.

          Nonparametric population modeling algorithms have a theoretical superiority over parametric methods to detect pharmacokinetic and pharmacodynamic subgroups and outliers within a study population. The authors created "Pmetrics," a new Windows and Unix R software package that updates the older MM-USCPACK software for nonparametric and parametric population modeling and simulation of pharmacokinetic and pharmacodynamic systems. The parametric iterative 2-stage Bayesian and the nonparametric adaptive grid (NPAG) approaches in Pmetrics were used to fit a simulated population with bimodal elimination (Kel) and unimodal volume of distribution (Vd), plus an extreme outlier, for a 1-compartment model of an intravenous drug. The true means (SD) for Kel and Vd in the population sample were 0.19 (0.17) and 102 (22.3), respectively. Those found by NPAG were 0.19 (0.16) and 104 (22.6). The iterative 2-stage Bayesian estimated them to be 0.18 (0.16) and 104 (24.4). However, given the bimodality of Kel, no subject had a value near the mean for the population. Only NPAG was able to accurately detect the bimodal distribution for Kel and to find the outlier in both the population model and in the Bayesian posterior parameter estimates. Built on over 3 decades of work, Pmetrics adopts a robust, reliable, and mature nonparametric approach to population modeling, which was better than the parametric method at discovering true pharmacokinetic subgroups and an outlier.
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            Consistency of the Maximum Likelihood Estimator in the Presence of Infinitely Many Incidental Parameters

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              ALGORITHM 659: implementing Sobol's quasirandom sequence generator

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                Author and article information

                Journal
                Pharmaceutics
                Pharmaceutics
                pharmaceutics
                Pharmaceutics
                MDPI
                1999-4923
                30 December 2020
                January 2021
                : 13
                : 1
                : 42
                Affiliations
                [1 ]Laboratory of Applied Pharmacokinetics and Bioinformatics, Children’s Hospital of Los Angeles, Los Angeles, CA 90027, USA; wyamada@ 123456chla.usc.edu (W.M.Y.); mneely@ 123456chla.usc.edu (M.N.N.); dbay007@ 123456earthlink.net (D.S.B.); uphill@ 123456cox.net (M.v.G.); r.jelliffe@ 123456usc.edu (R.W.J.); alona.kryshchenko@ 123456csuci.edu (A.K.)
                [2 ]Pediatric Infectious Diseases, Children’s Hospital of Los Angeles, Keck School of Medicine, University of Southern California, Los Angeles, CA 90027, USA
                [3 ]Department of Mathematics, University of Southern California, Los Angeles, CA 90089, USA; bartroff@ 123456usc.edu
                [4 ]Jet Propulsion Laboratory, California Institute of Technology, Pasadena, CA 91109, USA
                [5 ]Department of Mathematics, University of Washington, Seattle, WA 98195, USA; burke@ 123456math.washington.edu
                [6 ]Department of Mathematics, California State University Channel Islands, University Dr, Camarillo, CA 93012, USA
                [7 ]Certara, Raleigh, NC 27606, USA; Bob.Leary@ 123456certara.com
                [8 ]Department of Biology, University of La Verne, La Verne, CA 91750, USA; ttatarinova@ 123456laverne.edu
                Author notes
                [* ]Correspondence: schum@ 123456usc.edu ; Tel.: +1-818-249-9444
                [†]

                These authors contributed equally to this work.

                Author information
                https://orcid.org/0000-0003-3512-9202
                https://orcid.org/0000-0003-1787-1112
                Article
                pharmaceutics-13-00042
                10.3390/pharmaceutics13010042
                7823953
                33396749
                f3e38882-20f1-4134-a057-ee1eee89179a
                © 2020 by the authors.

                Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license ( http://creativecommons.org/licenses/by/4.0/).

                History
                : 05 November 2020
                : 23 December 2020
                Categories
                Article

                mixture distribution,mixture model,high dimensional statistics,nonparametric maximum likelihood,primal-dual interior-point method,adaptive grid,population model

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