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      HIV Envelope Glycoform Heterogeneity and Localized Diversity Govern the Initiation and Maturation of a V2 Apex Broadly Neutralizing Antibody Lineage

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          SUMMARY

          Understanding how broadly neutralizing antibodies (bnAbs) to HIV envelope (Env) develop during natural infection can help guide the rational design of an HIV vaccine. Here, we described a bnAb lineage targeting the Env V2 apex and the Ab-Env co-evolution that led to development of neutralization breadth. The lineage Abs bore an anionic heavy chain complementarity-determining region 3 (CDRH3) of 25 amino acids, among the shortest known for this class of Abs, and achieved breadth with only 10% nucleotide somatic hypermutation and no insertions or deletions. The data suggested a role for Env glycoform heterogeneity in the activation of the lineage germ-line B cell. Finally, we showed that localized diversity at key V2 epitope residues drove bnAb maturation toward breadth, mirroring the Env evolution pattern described for another donor who developed V2-apex targeting bnAbs. Overall, these findings suggest potential strategies for vaccine approaches based on germline-targeting and serial immunogen design.

          In Brief

          Understanding the molecular basis of HIV Env-specific broadly neutralizing antibodies (bnAbs) development is key for vaccine design. Landais et al. find that glycan heterogeneity played a role in the activation of V2 apex PCT64 bnAbs precursor and that viral evolution was similar to CAP256, another donor with V2 apex bnAbs.

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          Most cited references19

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          Linking crystallographic model and data quality.

          In macromolecular x-ray crystallography, refinement R values measure the agreement between observed and calculated data. Analogously, R(merge) values reporting on the agreement between multiple measurements of a given reflection are used to assess data quality. Here, we show that despite their widespread use, R(merge) values are poorly suited for determining the high-resolution limit and that current standard protocols discard much useful data. We introduce a statistic that estimates the correlation of an observed data set with the underlying (not measurable) true signal; this quantity, CC*, provides a single statistically valid guide for deciding which data are useful. CC* also can be used to assess model and data quality on the same scale, and this reveals when data quality is limiting model improvement.
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            A Blueprint for HIV Vaccine Discovery.

            Despite numerous attempts over many years to develop an HIV vaccine based on classical strategies, none has convincingly succeeded to date. A number of approaches are being pursued in the field, including building upon possible efficacy indicated by the recent RV144 clinical trial, which combined two HIV vaccines. Here, we argue for an approach based, in part, on understanding the HIV envelope spike and its interaction with broadly neutralizing antibodies (bnAbs) at the molecular level and using this understanding to design immunogens as possible vaccines. BnAbs can protect against virus challenge in animal models, and many such antibodies have been isolated recently. We further propose that studies focused on how best to provide T cell help to B cells that produce bnAbs are crucial for optimal immunization strategies. The synthesis of rational immunogen design and immunization strategies, together with iterative improvements, offers great promise for advancing toward an HIV vaccine. Copyright © 2012 Elsevier Inc. All rights reserved.
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              Breadth of human immunodeficiency virus-specific neutralizing activity in sera: clustering analysis and association with clinical variables.

              Induction of antibodies that neutralize a broad range of human immunodeficiency virus type 1 (HIV-1) isolates is a major goal of vaccine development. To study natural examples of broad neutralization, we analyzed sera from 103 HIV-1-infected subjects. Among progressor patients, 20% of sera neutralized more than 75% of a panel of 20 diverse viral isolates. Little activity was observed in sera from long-term nonprogressors (elite controllers). Breadth of neutralization was correlated with viral load, but not with CD4 count, history of past antiretroviral use, age, gender, race/ethnicity, or route of exposure. Clustering analysis of sera by a novel method identified a statistically robust subgrouping of sera that demonstrated broad and potent neutralization activity.
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                Author and article information

                Journal
                9432918
                8591
                Immunity
                Immunity
                Immunity
                1074-7613
                1097-4180
                24 November 2017
                21 November 2017
                21 November 2018
                : 47
                : 5
                : 990-1003.e9
                Affiliations
                [1 ]International AIDS Vaccine Initiative Neutralizing Antibody Center, The Scripps Research Institute, La Jolla, CA 92037, USA
                [2 ]Department of Immunology and Microbiology, The Scripps Research Institute, La Jolla, CA 92037, USA
                [3 ]Department of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, CA 92037, USA
                [4 ]Center for HIV/AIDS Vaccine Immunology and Immunogen Discovery, The Scripps Research Institute, La Jolla, CA 92037, USA
                [5 ]Skaggs Institute for Chemical Biology, The Scripps Research Institute, La Jolla, CA 92037, USA
                [6 ]Department of Medicine, University of California San Diego, San Diego, CA 92103, USA
                [7 ]Biomedical Informatics, University of California San Diego, San Diego, CA 92103, USA
                [8 ]Bioinformatics and Systems Biology, University of California San Diego, San Diego, CA 92103, USA
                [9 ]Icahn School of Medicine and Icahn Institute for Genomics and Multiscale Biology at Mount Sinai, New York, NY 10029, USA
                [10 ]Monogram Biosciences Inc., Laboratory Corporation of America Holdings, San Francisco CA 94080, USA
                [11 ]Theraclone Sciences, Inc., Seattle, WA 98104, USA
                [12 ]Rwanda-Zambia HIV Research Group, Project San Francisco, Kigali, Rwanda
                [13 ]Ragon Institute of Massachusetts General Hospital, Massachusetts Institute of Technology, and Harvard, Cambridge, MA 02114, USA
                [14 ]Veterans Affairs Healthcare System, San Diego, CA 92161, USA
                [15 ]International AIDS Vaccine Initiative, New York, NY 10004, USA
                [16 ]Institut de Biologie Structurale, Université Grenoble Alpes, Commissariat a l’Energie Atomique, Centre National de Recherche Scientifique and Centre Hospitalier Universitaire Grenoble Alpes, 38044 Grenoble, France
                Author notes
                [17]

                Present address: Center for Molecular Microscopy, Center for Cancer Research, National Cancer Institute, National Institutes of Health, Leidos Biomedical Inc., Bethesda, MD, USA

                [18]

                Present address: Temple University, Philadelphia PA 19122, USA

                [19]

                Present address: OncoResponse Inc, Seattle WA 98104, USA

                [20]

                Lead Contact

                Article
                NIHMS922223
                10.1016/j.immuni.2017.11.002
                5736302
                29166592
                f4049aab-f24e-44e3-9555-6f8e874ae300

                This is an open access article under the CC BY-NC-ND license ( http://creativecommons.org/licenses/by-nc-nd/4.0/).

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                Immunology
                Immunology

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