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      Infection with a Brazilian isolate of Zika virus generates RIG‐I stimulatory RNA and the viral NS5 protein blocks type I IFN induction and signaling

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          Abstract

          Zika virus (ZIKV) is a major public health concern in the Americas. We report that ZIKV infection and RNA extracted from ZIKV infected cells potently activated the induction of type I interferons (IFNs). This effect was fully dependent on the mitochondrial antiviral signaling protein (MAVS), implicating RIG‐I‐like receptors (RLRs) as upstream sensors of viral RNA. Indeed, RIG‐I and the related RNA sensor MDA5 contributed to type I IFN induction in response to RNA from infected cells. We found that ZIKV NS5 from a recent Brazilian isolate blocked type I IFN induction downstream of RLRs and also inhibited type I IFN receptor (IFNAR) signaling. We defined the ZIKV NS5 nuclear localization signal and report that NS5 nuclear localization was not required for inhibition of signaling downstream of IFNAR. Mechanistically, NS5 blocked IFNAR signaling by both leading to reduced levels of STAT2 and by blocking phosphorylation of STAT1, two transcription factors activated by type I IFNs. Taken together, our observations suggest that ZIKV infection induces a type I IFN response via RLRs and that ZIKV interferes with this response by blocking signaling downstream of RLRs and IFNAR.

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          Most cited references34

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            RIG-I detects viral genomic RNA during negative-strand RNA virus infection.

            RIG-I is a key mediator of antiviral immunity, able to couple detection of infection by RNA viruses to the induction of interferons. Natural RIG-I stimulatory RNAs have variously been proposed to correspond to virus genomes, virus replication intermediates, viral transcripts, or self-RNA cleaved by RNase L. However, the relative contribution of each of these RNA species to RIG-I activation and interferon induction in virus-infected cells is not known. Here, we use three approaches to identify physiological RIG-I agonists in cells infected with influenza A virus or Sendai virus. We show that RIG-I agonists are exclusively generated by the process of virus replication and correspond to full-length virus genomes. Therefore, nongenomic viral transcripts, short replication intermediates, and cleaved self-RNA do not contribute substantially to interferon induction in cells infected with these negative strand RNA viruses. Rather, single-stranded RNA viral genomes bearing 5'-triphosphates constitute the natural RIG-I agonists that trigger cell-intrinsic innate immune responses during infection. 2010 Elsevier Inc. All rights reserved.
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              Reconstitution of the RIG-I pathway reveals a signaling role of unanchored polyubiquitin chains in innate immunity.

              RIG-I detects invading viral RNA and activates the transcription factors NF-kappaB and IRF3 through the mitochondrial protein MAVS. Here we show that RNA bearing 5'-triphosphate strongly activates the RIG-I-IRF3 signaling cascade in a reconstituted system composed of RIG-I, mitochondria, and cytosol. Activation of RIG-I requires not only RNA but also polyubiquitin chains linked through lysine 63 (K63) of ubiquitin. RIG-I binds specifically to K63-polyubiquitin chains through its tandem CARD domains in a manner that depends on RNA and ATP. Mutations in the CARD domains that abrogate ubiquitin binding also impair RIG-I activation. Remarkably, unanchored K63-ubiquitin chains, which are not conjugated to any target protein, potently activate RIG-I. These ubiquitin chains function as an endogenous ligand of RIG-I in human cells. Our results delineate the mechanism of RIG-I activation, identify CARD domains as a ubiquitin sensor, and demonstrate that unanchored K63-polyubiquitin chains are signaling molecules in antiviral innate immunity. Copyright 2010 Elsevier Inc. All rights reserved.
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                Author and article information

                Contributors
                jan.rehwinkel@imm.ox.ac.uk
                Journal
                Eur J Immunol
                Eur. J. Immunol
                10.1002/(ISSN)1521-4141
                EJI
                European Journal of Immunology
                John Wiley and Sons Inc. (Hoboken )
                0014-2980
                1521-4141
                06 April 2018
                July 2018
                : 48
                : 7 ( doiID: 10.1002/eji.v48.7 )
                : 1120-1136
                Affiliations
                [ 1 ] Medical Research Council Human Immunology Unit Medical Research Council Weatherall Institute of Molecular Medicine Radcliffe Department of Medicine University of Oxford Oxford UK
                [ 2 ] MRC‐University of Glasgow Centre for Virus Research Glasgow Scotland UK
                [ 3 ] Genome Engineering Facility Medical Research Council Weatherall Institute of Molecular Medicine Radcliffe Department of Medicine University of Oxford Oxford UK
                [ 4 ] Department of Immunology The Fourth Military Medical University Xi'an PR China
                Author notes
                [*] [* ] Correspondence : Dr. Jan Rehwinkel, University of Oxford, Radcliffe Department of Medicine, Weatherall Institute of Molecular Medicine, JR Hospital, Headley Way, Oxford, United Kingdom of Great Britain and Northern Ireland, OX3 9DS, Oxford

                e‐mail: jan.rehwinkel@ 123456imm.ox.ac.uk

                [†]

                These authors contributed equally to this work.

                [‡]

                Equally contributing second authors.

                Author information
                http://orcid.org/0000-0003-3841-835X
                Article
                EJI4223
                10.1002/eji.201847483
                6055886
                29572905
                f4ed2f9e-cad5-42a5-8257-2ad29a859c33
                © 2018 The Authors. European Journal of Immunology published by WILEY‐VCH Verlag GmbH & Co. KGaA, Weinheim.

                This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.

                History
                : 05 January 2018
                : 04 March 2018
                : 12 March 2018
                Page count
                Figures: 8, Tables: 0, Pages: 17, Words: 11063
                Funding
                Funded by: Medical Research Council
                Award ID: MC_UU_12014
                Award ID: MR/N017552/1
                Funded by: Wellcome Trust
                Award ID: 100954
                Funded by: European Commission
                Funded by: Conselho Nacional de Desenvolvimento Científico e Tecnológico
                Award ID: 211806/2013‐7
                Funded by: H2020 Marie Skłodowska‐Curie Actions
                Award ID: MSCA‐ITN GA 675278 EDGE
                Categories
                Research Article|Basic
                Innate immunity
                Research Articles
                Basic
                Custom metadata
                2.0
                eji4223
                July 2018
                Converter:WILEY_ML3GV2_TO_NLMPMC version:version=5.4.3 mode:remove_FC converted:23.07.2018

                Immunology
                interferon,mda5,rig‐i,stat,zika virus
                Immunology
                interferon, mda5, rig‐i, stat, zika virus

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