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      Trisomy 21 activates the kynurenine pathway via increased dosage of interferon receptors

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          Abstract

          Trisomy 21 (T21) causes Down syndrome (DS), affecting immune and neurological function by ill-defined mechanisms. Here we report a large metabolomics study of plasma and cerebrospinal fluid, showing in independent cohorts that people with DS produce elevated levels of kynurenine and quinolinic acid, two tryptophan catabolites with potent immunosuppressive and neurotoxic properties, respectively. Immune cells of people with DS overexpress IDO1, the rate-limiting enzyme in the kynurenine pathway (KP) and a known interferon (IFN)-stimulated gene. Furthermore, the levels of IFN-inducible cytokines positively correlate with KP dysregulation. Using metabolic tracing assays, we show that overexpression of IFN receptors encoded on chromosome 21 contribute to enhanced IFN stimulation, thereby causing IDO1 overexpression and kynurenine overproduction in cells with T21. Finally, a mouse model of DS carrying triplication of IFN receptors exhibits KP dysregulation. Together, our results reveal a mechanism by which T21 could drive immunosuppression and neurotoxicity in DS.

          Abstract

          Down syndrome (DS) is caused by trisomy 21 (T21), but the underlying etiology of the related immune and neurological dysfunction is unclear. Here, the authors show that T21 activates the kynurenine pathway via increased interferon receptor copy number, which could contribute to DS pathophysiology.

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          Most cited references55

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          Controlling the False Discovery Rate: A Practical and Powerful Approach to Multiple Testing

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            Metabolomic analysis and visualization engine for LC-MS data.

            Metabolomic analysis by liquid chromatography-high-resolution mass spectrometry results in data sets with thousands of features arising from metabolites, fragments, isotopes, and adducts. Here we describe a software package, Metabolomic Analysis and Visualization ENgine (MAVEN), designed for efficient interactive analysis of LC-MS data, including in the presence of isotope labeling. The software contains tools for all aspects of the data analysis process, from feature extraction to pathway-based graphical data display. To facilitate data validation, a machine learning algorithm automatically assesses peak quality. Users interact with raw data primarily in the form of extracted ion chromatograms, which are displayed with overlaid circles indicating peak quality, and bar graphs of peak intensities for both unlabeled and isotope-labeled metabolite forms. Click-based navigation leads to additional information, such as raw data for specific isotopic forms or for metabolites changing significantly between conditions. Fast data processing algorithms result in nearly delay-free browsing. Drop-down menus provide tools for the overlay of data onto pathway maps. These tools enable animating series of pathway graphs, e.g., to show propagation of labeled forms through a metabolic network. MAVEN is released under an open source license at http://maven.princeton.edu.
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              Succinate: a metabolic signal in inflammation.

              Succinate is an intermediate of the tricarboxylic acid (TCA) cycle, and plays a crucial role in adenosine triphosphate (ATP) generation in mitochondria. Recently, new roles for succinate outside metabolism have emerged. Succinate stabilizes the transcription factor hypoxia-inducible factor-1α (HIF-1α) in specific tumors and in activated macrophages, and stimulates dendritic cells via its receptor succinate receptor 1. Furthermore, succinate has been shown to post-translationally modify proteins. This expanding repertoire of functions for succinate suggests a broader role in cellular activation. We review the new roles of succinate and draw parallels to other metabolites such as NAD(+) and citrate whose roles have expanded beyond metabolism and into signaling.
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                Author and article information

                Contributors
                kelly.d.sullivan@cuanschutz.edu
                joaquin.espinosa@cuanschutz.edu
                Journal
                Nat Commun
                Nat Commun
                Nature Communications
                Nature Publishing Group UK (London )
                2041-1723
                18 October 2019
                18 October 2019
                2019
                : 10
                : 4766
                Affiliations
                [1 ]ISNI 0000 0001 0703 675X, GRID grid.430503.1, Linda Crnic Institute for Down Syndrome, , University of Colorado Anschutz Medical Campus, ; Aurora, Colorado USA
                [2 ]ISNI 0000 0001 0703 675X, GRID grid.430503.1, Computational Bioscience Program, , University of Colorado Anschutz Medical Campus, ; Aurora, Colorado USA
                [3 ]ISNI 0000 0001 0703 675X, GRID grid.430503.1, Department of Pharmacology, , University of Colorado Anschutz Medical Campus, ; Aurora, Colorado USA
                [4 ]ISNI 0000 0001 0703 675X, GRID grid.430503.1, Department of Biochemistry and Molecular Genetics, , University of Colorado Anschutz Medical Campus, ; Aurora, Colorado USA
                [5 ]ISNI 0000 0001 0703 675X, GRID grid.430503.1, Department of Pediatrics, , University of Colorado Anschutz Medical Campus, ; Aurora, Colorado USA
                [6 ]GRID grid.7080.f, Department of Neurology, Hospital de la Santa Creu i Sant Pau, Biomedical Research Institute Sant Pau, , Universitat Autonoma de Barcelona, CIBERNED, ; Barcelona, Spain
                [7 ]Barcelona Down Medical Center, Catalan Down Syndrome Foundation, Barcelona, Spain
                [8 ]ISNI 0000 0001 0703 675X, GRID grid.430503.1, Functional Genomics Facility, , University of Colorado Anschutz Medical Campus, ; Aurora, Colorado USA
                [9 ]ISNI 0000000096214564, GRID grid.266190.a, Department of Molecular, Cellular and Developmental Biology, , University of Colorado Boulder, ; Boulder, Colorado USA
                Author information
                http://orcid.org/0000-0002-9285-5297
                http://orcid.org/0000-0002-9899-831X
                http://orcid.org/0000-0003-2725-0205
                Article
                12739
                10.1038/s41467-019-12739-9
                6800452
                31628327
                f52227d2-2e22-4358-b536-76a33eed5901
                © The Author(s) 2019

                Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

                History
                : 10 January 2019
                : 23 September 2019
                Funding
                Funded by: FundRef https://doi.org/10.13039/501100004587, Ministry of Economy and Competitiveness | Instituto de Salud Carlos III (Institute of Health Carlos III);
                Award ID: PI13/01532
                Award ID: PI16/01825
                Award ID: PI14/01126
                Award ID: PI17/01019
                Award Recipient :
                Funded by: FundRef https://doi.org/10.13039/100008666, Fundació la Marató de TV3 (TV3 Marathon Foundation);
                Award ID: 20141210
                Award Recipient :
                Funded by: FundRef https://doi.org/10.13039/501100002809, Generalitat de Catalunya (Government of Catalonia);
                Award ID: SLT006/17/00119
                Award Recipient :
                Funded by: FundRef https://doi.org/10.13039/100005508, Boettcher Foundation;
                Funded by: FundRef https://doi.org/10.13039/100008086, Global Down Syndrome Foundation;
                Funded by: Anna and John J. Sie Foundation University of Colorado School of Medicine Linda Crnic Institute for Down Syndrome
                Categories
                Article
                Custom metadata
                © The Author(s) 2019

                Uncategorized
                metabolomics,chromosome abnormality,cytokines,immunological disorders
                Uncategorized
                metabolomics, chromosome abnormality, cytokines, immunological disorders

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