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      Coordination Chemistry of a Molecular Pentafoil Knot

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          Abstract

          The binding of Zn(II) cations to a pentafoil (5 1) knotted ligand allows the synthesis of otherwise inaccessible metalated molecular pentafoil knots via transmetalation, affording the corresponding “first-sphere” coordination Co(II), Ni(II), and Cu(II) pentanuclear knots in good yields (≥85%). Each of the knot complexes was characterized by mass spectrometry, the diamagnetic (zinc) knot complex was characterized by 1H and 13C NMR spectroscopy, and the zinc, cobalt, and nickel pentafoil knots afforded single crystals whose structures were determined by X-ray crystallography. Lehn-type circular helicates generally only form with tris-bipy ligand strands and Fe(II) (and, in some cases, Ni(II) and Zn(II)) salts, so such architectures become accessible for other metal cations only through the use of knotted ligands. The different metalated knots all exhibit “second-sphere” coordination of a single chloride ion within the central cavity of the knot through CH···Cl hydrogen bonding and electrostatic interactions. The chloride binding affinities were determined in MeCN by isothermal titration calorimetry, and the strength of binding was shown to vary over 3 orders of magnitude for the different metal-ion–knotted-ligand second-sphere coordination complexes.

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          Most cited references14

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          From Chemical Topology to Molecular Machines (Nobel Lecture)

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            Statistical mechanics and topology of polymer chains.

            The statistical-mechanical treatment of closed polymer chains based on algebraic topology is proposed. Using the Monte-Carlo method numerical results were obtained for the probability to knot formation during random closing of polymer chains of different length. For very rigid chains such as DNA double helix the probability of knot formation is rather great. Topological restrictions in a system of two polymer chains are shown to lead to a specific topological interaction between them.
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              Allosteric initiation and regulation of catalysis with a molecular knot.

              Molecular knots occur in DNA, proteins, and other macromolecules. However, the benefits that can potentially arise from tying molecules in knots are, for the most part, unclear. Here, we report on a synthetic molecular pentafoil knot that allosterically initiates or regulates catalyzed chemical reactions by controlling the in situ generation of a carbocation formed through the knot-promoted cleavage of a carbon-halogen bond. The knot architecture is crucial to this function because it restricts the conformations that the molecular chain can adopt and prevents the formation of catalytically inactive species upon metal ion binding. Unknotted analogs are not catalytically active. Our results suggest that knotting molecules may be a useful strategy for reducing the degrees of freedom of flexible chains, enabling them to adopt what are otherwise thermodynamically inaccessible functional conformations.
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                Author and article information

                Journal
                J Am Chem Soc
                J. Am. Chem. Soc
                ja
                jacsat
                Journal of the American Chemical Society
                American Chemical Society
                0002-7863
                1520-5126
                11 February 2019
                06 March 2019
                : 141
                : 9
                : 3952-3958
                Affiliations
                []School of Chemistry and Molecular Engineering, East China Normal University , Shanghai 200062, China
                []School of Chemistry, University of Manchester , Manchester M13 9PL, United Kingdom
                [§ ]SYNBIOCHEM, Manchester Institute of Biotechnology, University of Manchester , Manchester M1 7DN, United Kingdom
                Author notes
                Article
                10.1021/jacs.8b12548
                6438588
                30742430
                f55a2c18-896d-48eb-a564-a2b64518576a
                Copyright © 2019 American Chemical Society

                This is an open access article published under a Creative Commons Attribution (CC-BY) License, which permits unrestricted use, distribution and reproduction in any medium, provided the author and source are cited.

                History
                : 22 November 2018
                Categories
                Article
                Custom metadata
                ja8b12548
                ja-2018-125489

                Chemistry
                Chemistry

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