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      Geum sunhangii (Rosaceae), a new species from Hubei Province, China

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          Abstract

          Geum sunhangii – first discovered in Shennongjia National Nature Reserve, Hubei Province, China – is described as a new species of Rosaceae . Compared to all known Chinese Geum species, the new species differs by possessing jointed styles, imbricate petals and a reniform radical leaf terminal leaflet. Most significantly, the jointed style is curved at an obtuse or a right angle. In addition, the inclusion of this species within the genus Geum was supported by phylogenetic analysis using the sequence data of a nuclear ribosomal internal transcribed spacer (nrITS) and a chloroplast trnL–trnF intergenic spacer. The new species was found to be closely related to G. rivale and G. aleppicum .

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          Most cited references15

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          SequenceMatrix: concatenation software for the fast assembly of multi-gene datasets with character set and codon information

          We present SequenceMatrix, software that is designed to facilitate the assembly and analysis of multi-gene datasets. Genes are concatenated by dragging and dropping FASTA, NEXUS, or TNT files with aligned sequences into the program window. A multi-gene dataset is concatenated and displayed in a spreadsheet; each sequence is represented by a cell that provides information on sequence length, number of indels, the number of ambiguous bases ("Ns"), and the availability of codon information. Alternatively, GenBank numbers for the sequences can be displayed and exported. Matrices with hundreds of genes and taxa can be concatenated within minutes and exported in TNT, NEXUS, or PHYLIP formats, preserving both character set and codon information for TNT and NEXUS files. SequenceMatrix also creates taxon sets listing taxa with a minimum number of characters or gene fragments, which helps assess preliminary datasets. Entire taxa, whole gene fragments, or individual sequences for a particular gene and species can be excluded from export. Data matrices can be re-split into their component genes and the gene fragments can be exported as individual gene files. SequenceMatrix also includes two tools that help to identify sequences that may have been compromised through laboratory contamination or data management error. One tool lists identical or near-identical sequences within genes, while the other compares the pairwise distance pattern of one gene against the pattern for all remaining genes combined. SequenceMatrix is Java-based and compatible with the Microsoft Windows, Apple MacOS X and Linux operating systems. The software is freely available from http://code.google.com/p/sequencematrix/. © The Willi Hennig Society 2010.
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            Phylogeny and classification of Rosaceae

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              • Conference Proceedings: not found

              BioEdit: A user-friendly biological sequence alignment program for Windows 95/98/NT

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                Author and article information

                Contributors
                Journal
                PhytoKeys
                PhytoKeys
                3
                urn:lsid:arphahub.com:pub:F7FCE910-8E78-573F-9C77-7788555F8AAD
                PhytoKeys
                Pensoft Publishers
                1314-2011
                1314-2003
                2020
                21 August 2020
                : 156
                : 113-124
                Affiliations
                [1 ] School of Life Sciences, Yunnan Normal University, Kunming 650500, China
                [2 ] Key Laboratory of Plant Resources Conservation and Utilization, Jishou University, Jishou, Hunan 416000, China
                [3 ] Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming 650201, Yunnan, China
                [4 ] University of Chinese Academy of Sciences, Beijing 100049, China
                [5 ] Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China
                [6 ] Administration of Shennongjia National Park, Shennongjia 442400, Hubei China
                [7 ] Central Herbarium of Uzbekistan, Institute of Botany, Academy Sciences of Uzbekistan, Tashkent 100025, Uzbekistan
                Author notes
                Corresponding author: Tao Deng ( dengtao@ 123456mail.kib.ac.cn ); Zhi-Min Li ( lizhimin_vip@ 123456163.com )

                Academic editor: Yasen Mutafchiev

                Author information
                https://orcid.org/0000-0002-0110-005X
                Article
                37277
                10.3897/phytokeys.156.37277
                7455576
                f5bfde76-bde2-4de0-9043-802680d952ef
                Zhen-Yu Lv, Dai-Gui Zhang, Xian-Han Huang, Heng-Chang Wang, Jing-Yuan Yang, Komiljon Tojibaev, Tao Deng, Zhi-Min Li

                This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

                History
                : 13 June 2019
                : 29 June 2020
                Funding
                Yunnan Normal University, Jishou University, Kunming Institute of Botany, Wuhan Botanical Garden, Administration of Shennongjia National Park
                Categories
                Research Article
                Rosaceae
                Phylogeny
                Taxonomy
                Asia
                China

                Plant science & Botany
                anatomical,morphology,phylogeny,taxonomy,plantae,rosales,rosaceae
                Plant science & Botany
                anatomical, morphology, phylogeny, taxonomy, plantae, rosales, rosaceae

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