[1
]ISNI 0000 0004 1936 7312, GRID grid.34421.30, Veterinary Microbiology and Preventive Medicine, , Iowa State University, ; Ames, IA USA
[2
]Program in Bioinformatics and Computational Biology, Ames, IA USA
[3
]ISNI 0000 0001 0790 959X, GRID grid.411377.7, Indiana University Bloomington, ; Bloomington, Indiana USA
[4
]ISNI 0000000122986657, GRID grid.34477.33, Department of Biomedical Informatics and Medical Education, , University of Washington, ; Seattle, WA USA
[5
]ISNI 0000 0004 1936 8972, GRID grid.25879.31, Department of Systems Pharmacology and Translational Therapeutics, , University of Pennsylvania, ; Philadelphia, PA USA
[6
]ISNI 0000 0001 2179 2404, GRID grid.254880.3, Geisel School of Medicine at Dartmouth, ; Hanover, NH USA
[7
]Department of Molecular and Systems Biology, Hanover, NH USA
[8
]ISNI 0000 0001 2179 2404, GRID grid.254880.3, Department of Microbiology and Immunology, , Geisel School of Medicine at Dartmouth, ; Hanover, NH USA
[9
]ISNI 0000 0000 9709 7726, GRID grid.225360.0, European Molecular Biology Laboratory, , European Bioinformatics Institute (EMBL-EBI), ; Hinxton, United Kingdom
[10
]Program in Computer Science, Ames, IA USA
[11
]ISNI 0000 0001 2342 7339, GRID grid.14442.37, Department of Computer Engineering, , Hacettepe University, ; Ankara, Turkey
[12
]ISNI 0000 0001 1881 7391, GRID grid.6935.9, Department of Computer Engineering, , Middle East Technical University (METU), ; Ankara, Turkey
[13
]ISNI 0000 0004 5896 2288, GRID grid.503005.3, Department of Computer Engineering, , Iskenderun Technical University, ; Hatay, Turkey
[14
]ISNI 0000 0001 1881 7391, GRID grid.6935.9, CanSyL, Graduate School of Informatics, , Middle East Technical University, ; Ankara, Turkey
[15
]ISNI 0000000086837370, GRID grid.214458.e, Department of Computational Medicine and Bioinformatics, , University of Michigan, ; Ann Arbor, MI USA
[16
]ISNI 0000000086837370, GRID grid.214458.e, Department of Biological Chemistry, , University of Michigan, ; Ann Arbor, MI USA
[17
]Achira Labs, Bangalore, India
[18
]ISNI 0000 0001 1811 6966, GRID grid.7722.0, Institute for Research in Biomedicine (IRB Barcelona), ; Barcelona, Spain
[19
]ISNI 0000 0000 9601 989X, GRID grid.425902.8, Institució Catalana de Recerca i Estudis Avançats (ICREA), ; Barcelona, Spain
[20
]ISNI 0000 0004 0387 1602, GRID grid.10097.3f, INB Coordination Unit, Life Sciences Department, , Barcelona Supercomputing Center, ; Barcelona, Catalonia Spain
[21
]ISNI 0000 0000 8700 1153, GRID grid.7719.8, (former) INB GN2, Structural and Computational Biology Programme, , Spanish National Cancer Research Centre, ; Barcelona, Catalonia Spain
[22
]ISNI 0000 0001 2166 9385, GRID grid.7149.b, Laboratory for Bioinformatics and Computational Chemistry, Institute of Nuclear Sciences
VINCA, , University of Belgrade, ; Belgrade, Serbia
[23
]ISNI 0000 0001 2181 7878, GRID grid.47840.3f, Molecular Cell Biomechanics Laboratory, Departments of Bioengineering, , University of California Berkeley, ; Berkeley, CA USA
[24
]Computational Biology of Infection Research, Helmholtz Centre for Infection Research,
Berkeley, CA USA
[25
]Departments of Bioengineering and Mechanical Engineering, Berkeley, CA USA
[26
]ISNI 0000 0004 1757 1758, GRID grid.6292.f, Bologna Biocomputing Group, Department of Pharmacy and Biotechnology, , University of Bologna, ; Bologna, Italy
[27
]ISNI 0000 0001 1940 4177, GRID grid.5326.2, National Research Council, IBIOM, ; Bologna, Italy
[28
]ISNI 0000 0001 2240 3300, GRID grid.10388.32, University of Bonn: INRES Crop Bioinformatics, ; Bonn, North Rhine-Westphalia Germany
[29
]ISNI 0000 0001 2240 3300, GRID grid.10388.32, INRES Crop Bioinformatics, , University of Bonn, ; Bonn, Germany
[30
]ISNI 0000 0001 2156 6108, GRID grid.41891.35, Gianforte School of Computing, , Montana State University, ; Bozeman, Montana USA
[31
]ISNI 0000 0004 1936 7603, GRID grid.5337.2, University of Bristol, Computer Science, ; Bristol, Bristol United Kingdom
[32
]ISNI 0000 0001 2238 295X, GRID grid.7490.a, Computational Biology of Infection Research, , Helmholtz Centre for Infection Research, ; Brunswick, Germany
[33
]RESIST, DFG Cluster of Excellence 2155, Brunswick, Germany
[34
]Interuniversity Institute of Bioinformatics in Brussels, Université libre de Bruxelles
- Vrije Universiteit Brussel, Brussels, Belgium
[35
]ISNI 0000 0001 2348 0746, GRID grid.4989.c, Machine Learning Group, , Université libre de Bruxelles, ; Brussels, Belgium
[36
]ISNI 0000 0001 2290 8069, GRID grid.8767.e, Artificial Intelligence lab, , Vrije Universiteit Brussel, ; Brussels, Belgium
[37
]ISNI 0000 0000 9709 7726, GRID grid.225360.0, European Molecular Biolo gy Labora tory, European Bioinformatics Institute (EMBL-EBI),
; Cambridge, UK
[38
]ISNI 0000 0004 0605 769X, GRID grid.42475.30, MRC Laboratory of Molecular Biology, ; Cambridge, United Kingdom
[39
]ISNI 0000 0001 2232 2818, GRID grid.9759.2, University of Kent, School of Computing, ; Canterbury, United Kingdom
[40
]ISNI 0000 0001 2232 2818, GRID grid.9759.2, School of Biosciences, , University of Kent, ; Canterbury, Kent United Kingdom
[41
]ISNI 0000 0001 2162 3504, GRID grid.134936.a, University of Missouri, Computer Science, ; Columbia, Missouri USA
[42
]ISNI 0000 0001 2162 3504, GRID grid.134936.a, Department of Electrical Engineering and Computer Science, , University of Missouri, ; Columbia, MO USA
[43
]ISNI 0000 0004 1936 8606, GRID grid.26790.3a, University of Miami, ; Coral Gables, Florida USA
[44
]ISNI 0000 0001 2161 2573, GRID grid.4464.2, Centre for Systems and Synthetic Biology, Department of Computer Science, Royal Holloway,
, University of London, ; Egham, Surrey United Kingdom
[45
]ISNI 0000 0004 0488 0789, GRID grid.6142.1, School of Mathematics, Statistics and Applied Mathematics, , National University of Ireland, ; Galway, Galway Ireland
[46
]ISNI 0000000123222966, GRID grid.6936.a, Technical University of Munich, ; Garching, Germany
[47
]Faculty for Informatics, Garching, Germany
[48
]Department for Bioinformatics and Computational Biology, Garching, Germany
[49
]School of Computing Sciences and Computer Engineering, Hattiesburg, Mississippi USA
[50
]ISNI 0000 0004 0410 2071, GRID grid.7737.4, Institute of Biotechnology, Helsinki Institute of Life Sciences, , University of Helsinki, ; Finland, Helsinki Finland
[51
]ISNI 0000 0004 0410 2071, GRID grid.7737.4, Institute of Biotechnology, , University of Helsinki, ; Helsinki, Finland
[52
]ISNI 0000 0004 0506 4804, GRID grid.418916.3, Compugen Ltd., ; Holon, Israel
[53
]ISNI 0000 0001 2160 926X, GRID grid.39382.33, Baylor College of Medicine, Department of Biochemistry and Molecular Biology, ; Houston, TX USA
[54
]ISNI 0000 0001 2160 926X, GRID grid.39382.33, Baylor College of Medicine, Department of Molecular and Human Genetics, ; Houston, TX USA
[55
]ISNI 0000 0004 0532 0580, GRID grid.38348.34, National TsingHua University, ; Hsinchu, Taiwan
[56
]ISNI 0000 0004 0532 0580, GRID grid.38348.34, Department of Electrical Engineering in National Tsing Hua University, ; Hsinchu City, Taiwan
[57
]ISNI 0000 0004 1937 0538, GRID grid.9619.7, The Hebrew University of Jerusalem, ; Jerusalem, Israel
[58
]ISNI 0000 0001 2107 4242, GRID grid.266100.3, University of California San Diego, San Diego Supercomputer Center, ; La Jolla, California USA
[59
]ISNI 0000 0001 2165 4204, GRID grid.9851.5, Department of Computational Biology and Center for Integrative Genomics, , University of Lausanne, ; Lausanne, Switzerland
[60
]ISNI 0000000121901201, GRID grid.83440.3b, Department of Genetics, Evolution & Environment, and Department of Computer Science,
, University College London, ; London, UK
[61
]ISNI 0000 0001 2223 3006, GRID grid.419765.8, Swiss Institute of Bioinformatics, ; Lausanne, Switzerland
[62
]ISNI 0000 0001 0706 0012, GRID grid.11375.31, Department of Knowledge Technologies, , Jozef Stefan Institute, ; Ljubljana, Slovenia
[63
]ISNI 0000 0001 0706 0012, GRID grid.11375.31, Jozef Stefan Institute, ; Ljubljana, Slovenia
[64
]GRID grid.445211.7, Jozef Stefan International Postgraduate School, ; Ljubljana, Slovenia
[65
]ISNI 0000000121901201, GRID grid.83440.3b, Research Department of Structural and Molecular Biology, , University College London, ; London, England
[66
]ISNI 0000000121901201, GRID grid.83440.3b, Research Department of Structural and Molecular Biology, , University College London, ; London, United Kingdom
[67
]ISNI 0000 0001 0726 8331, GRID grid.7628.b, Department of Health and Life Sciences, , Oxford Brookes University, ; London, UK
[68
]ISNI 0000000121901201, GRID grid.83440.3b, Department of Computer Science, , University College London, ; London, United Kingdom
[69
]ISNI 0000 0004 1795 1830, GRID grid.451388.3, The Francis Crick Institute, Biomedical Data Science Laboratory, ; London, United Kingdom
[70
]ISNI 0000000121901201, GRID grid.83440.3b, Department of Genetics, Evolution and Environment, , University College London, ; Gower Street, London, WC1E 6BT United Kingdom
[71
]ISNI 0000 0001 2223 3006, GRID grid.419765.8, SIB Swiss Institute of Bioinformatics, ; Lausanne, 1015 Switzerland
[72
]ISNI 0000 0001 0125 7682, GRID grid.467824.b, Cardiovascular Proteomics Laboratory, Centro Nacional de Investigaciones Cardiovasculares
Carlos III (CNIC), ; Madrid, Spain
[73
]ISNI 0000 0000 8700 1153, GRID grid.7719.8, Spanish National Cancer Research Centre (CNIO), ; Madrid, Spain
[74
]ISNI 0000 0004 1757 2822, GRID grid.4708.b, Università degli Studi di Milano - Computer Science Department - AnacletoLab, ; Milan, Milan Italy
[75
]ISNI 0000 0004 0599 0488, GRID grid.464638.b, Institut de Biologie Computationnelle, LIRMM, CNRS-UMR 5506, Universite de Montpellier,
; Montpellier, France
[76
]ISNI 0000000123222966, GRID grid.6936.a, Department of Informatics, Bioinformatics and Computational Biology—i12, , Technische Universitat Munchen, ; Munich, Germany
[77
]ISNI 0000 0001 2179 5429, GRID grid.462764.5, University of Lorraine, CNRS, Inria, LORIA, ; Nancy, 54000 France
[78
]ISNI 0000 0001 2194 6418, GRID grid.29172.3f, University of Lorraine, ; Nancy, Lorraine France
[79
]ISNI 0000 0001 2186 3954, GRID grid.5328.c, Inria, ; Nancy, France
[80
]ISNI 0000 0004 1936 8753, GRID grid.137628.9, Department of Biology, , New York University, ; New York, NY USA
[81
]ISNI 0000 0004 1936 8753, GRID grid.137628.9, NYU Center for Data Science, ; New York, 10010 NY USA
[82
]Flatiron Institute, CCB, New York, 10010 NY USA
[83
]GRID grid.430264.7, Center for Computational Biology (CCB), Flatiron Institute, Simons Foundation, ; New York, New York USA
[84
]ISNI 0000 0004 1936 8753, GRID grid.137628.9, Center for Data Science, New York University, ; New York, 10011 NY USA
[85
]ISNI 0000 0004 1936 8948, GRID grid.4991.5, Wellcome Centre for Human Genetics, , University of Oxford, ; Oxford, UK
[86
]ISNI 0000 0004 1757 3470, GRID grid.5608.b, Department of Molecular Medicine, , University of Padova, ; Padova, Italy
[87
]ISNI 0000 0004 1757 3470, GRID grid.5608.b, Department of Biology, , University of Padova, ; Padova, Italy
[88
]ISNI 0000 0004 1758 9800, GRID grid.418879.b, CNR Institute of Neuroscience, ; Padova, Italy
[89
]ISNI 0000 0004 1757 3470, GRID grid.5608.b, Department of Biomedical Sciences, , University of Padua, ; Padova, Italy
[90
]GRID grid.444797.d, Department of Computer Science, , National University of Computer and Emerging Sciences, ; Peshawar, Khyber Pakhtoonkhwa Pakistan
[91
]ISNI 0000 0001 2248 3398, GRID grid.264727.2, Department of Computer and Information Sciences, , Temple University, ; Philadelphia, PA USA
[92
]ISNI 0000 0001 0668 7243, GRID grid.266093.8, University of California, Riverside, ; Philadelphia, PA USA
[93
]ISNI 0000 0004 1936 9115, GRID grid.253294.b, Department of Biology, , Brigham Young University, ; Provo, UT USA
[94
]Bioinformatics Research Group, Provo, UT USA
[95
]ISNI 0000 0004 0457 9566, GRID grid.9435.b, School of Biological Sciences, , University of Reading, ; Reading, England United Kingdom
[96
]ISNI 0000 0001 2297 6811, GRID grid.266102.1, Department of Pharmaceutical Chemistry, ; San Francisco, CA USA
[97
]ISNI 0000 0001 2297 6811, GRID grid.266102.1, UC Berkeley - UCSF Graduate Program in Bioengineering, , University of California, ; San Francisco, 94158 CA USA
[98
]ISNI 0000 0001 2297 6811, GRID grid.266102.1, Department of Bioengineering and Therapeutic Sciences, , University of California, ; San Francisco, 94158 CA USA
[99
]ISNI 0000 0004 1755 6224, GRID grid.424414.3, Research and Innovation Center, Edmund Mach Foundation, ; San Michele all’Adige, Italy
[100
]ISNI 0000 0001 0125 2443, GRID grid.8547.e, State Key Laboratory of Genetic Engineering and Collaborative Innovation Center for
Genetics and Development, Fudan University, ; Shanghai, Shanghai China
[101
]ISNI 0000 0001 0125 2443, GRID grid.8547.e, Department of Biostatistics and Computational Biology, School of Life Sciences, , Fudan University, ; Shanghai, Shanghai China
[102
]ISNI 0000 0001 0125 2443, GRID grid.8547.e, School of Computer Science and Shanghai Key Lab of Intelligent Information Processing,
, Fudan University, ; Shanghai, China
[103
]ISNI 0000 0001 0125 2443, GRID grid.8547.e, Institute of Science and Technology for Brain-Inspired Intelligence and Shanghai Institute
of Artificial Intelligence Algorithms, , Fudan University, ; Shanghai, China
[104
]ISNI 0000 0004 0369 313X, GRID grid.419897.a, Key Laboratory of Computational Neuroscience and Brain-Inspired Intelligence (Fudan
University), Ministry of Education, ; Shanghai, China
[105
]ISNI 0000 0001 0125 2443, GRID grid.8547.e, State Key Laboratory of Genetic Engineering and Collaborative Innovation Center for
Genetics and Development, Department of Biostatistics and Computational Biology, School
of Life Sciences, , Fudan University, ; Shanghai, Shanghai China
[106
]ISNI 0000 0000 9025 8099, GRID grid.239573.9, Department of Pediatrics, Brain Tumor Center, Division of Experimental Hematology
and Cancer Biology, , Cincinnati Children’s Hospital Medical Center, ; Cincinnati, OH USA
[107
]ISNI 0000 0001 0492 9915, GRID grid.261584.c, Department of Computer Science, , Pacific Lutheran University, ; Tacoma, WA USA
[108
]ISNI 0000 0001 2106 6277, GRID grid.412042.1, Department of Computer Science, , National Chengchi University, ; Taipei, Taiwan
[109
]ISNI 0000 0000 9805 2626, GRID grid.250464.1, Okinawa Institute of Science and Technology, ; Tancha, Okinawa Japan
[110
]ISNI 0000 0004 1937 0546, GRID grid.12136.37, Tel Aviv University, ; Tel Aviv, Israel
[111
]ISNI 0000 0001 1926 5090, GRID grid.45672.32, Computer, Electrical and Mathematical Sciences & Engineering Division, Computational
Bioscience Research Center, , King Abdullah University of Science and Technology, ; Thuwal, Jeddah Saudi Arabia
[112
]ISNI 0000 0001 1926 5090, GRID grid.45672.32, Computational Bioscience Research Center (CBRC), , King Abdullah University of Science and Technology, ; Thuwal, Saudi Arabia
[113
]ISNI 0000 0001 1926 5090, GRID grid.45672.32, Computer, Electrical and Mathematical Sciences Engineering Division (CEMSE), , King Abdullah University of Science and Technology, ; Thuwal, Saudi Arabia
[114
]ISNI 0000 0004 1937 0343, GRID grid.4800.c, Control and Computer Engineering Department, , Politecnico di Torino, ; Torino, TO Italy
[115
]ISNI 0000 0001 2097 1371, GRID grid.1374.1, Department of Future Technologies, Turku NLP Group, , University of Turku, ; Turku, Finland
[116
]ISNI 0000 0001 2097 1371, GRID grid.1374.1, University of Turku Graduate School (UTUGS), ; Turku, Finland
[117
]ISNI 0000 0001 2097 1371, GRID grid.1374.1, University of Turku, ; Turku, Finland
[118
]ISNI 0000 0001 2290 2396, GRID grid.470079.d, Turku Centre for Computer Science (TUCS), ; Turku, Finland
[119
]ISNI 0000 0001 2097 1371, GRID grid.1374.1, Department of Future Technologies, Faculty of Science and Engineering, , University of Turku, ; Turku, FI-20014 Finland
[120
]ISNI 0000 0001 2290 2396, GRID grid.470079.d, Turku Centre for Computer Science (TUCS), Agora, ; Vesilinnantie 3, Turku, FI-20500 Finland
[121
]ISNI 0000 0001 2097 1371, GRID grid.1374.1, Department of Future Technologies, , University of Turku, ; Turku, Finland
[122
]ISNI 0000 0004 1937 2197, GRID grid.169077.e, Department of Biological Sciences, Department of Computer Science, , Purdue University, ; 47907 IN, USA
[123
]ISNI 0000 0001 2179 9593, GRID grid.24827.3b, Department of Pediatrics, , University of Cincinnati, ; Cincinnati, 45229 OH USA
[124
]ISNI 0000 0004 1937 2197, GRID grid.169077.e, Department of Computer Science, , Purdue University, ; West Lafayette, IN USA
[125
]ISNI 0000 0004 0635 7705, GRID grid.4905.8, Division of Electronics, , Rudjer Boskovic Institute, ; Zagreb, Croatia
[126
]ISNI 0000 0001 2156 2780, GRID grid.5801.c, Department of Computer Science, , ETH Zurich, ; Zurich, Switzerland
[127
]SIB Swiss Institute of Bioinformatics, Zurich, Switzerland
[128
]ISNI 0000 0004 1936 8083, GRID grid.47894.36, Department of Computer Science, , Colorado State University, ; Fort Collins, CO USA
[129
]ISNI 0000000123222966, GRID grid.6936.a, Department of Informatics, Bioinformatics & Computational Biology—i12, , Technische Universitat Munchen, ; Munich, Germany
[130
]ISNI 0000000123222966, GRID grid.6936.a, Institute for Food and Plant Sciences WZW, Technische Universität München, ; Freising, Germany
[131
]ISNI 0000 0001 2181 7878, GRID grid.47840.3f, University of California, ; Berkeley, CA USA
[132
]ISNI 0000 0001 2175 0319, GRID grid.185648.6, Biological Sciences, , University of Illinois at Chicago, ; Chicago, Illinois USA
[133
]ISNI 0000 0001 2179 2404, GRID grid.254880.3, Department of Molecular and Systems Biology, , Geisel School of Medicine at Dartmouth, ; Hanover, NH USA
[134
]ISNI 0000 0004 1936 8972, GRID grid.25879.31, Department of Systems Pharmacology and Translational Therapeutics, Perelman School
of Medicine, , University of Pennsylvania, ; Philadelphia, Pennsylvania USA
[135
]GRID grid.430722.0, Childhood Cancer Data Lab, Alex’s Lemonade Stand Foundation, ; Philadelphia, Pennsylvania USA
[136
]ISNI 0000 0001 2173 3359, GRID grid.261112.7, Khoury College of Computer Sciences, , Northeastern University, ; Boston, MA USA