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      An interactive website tracking COVID-19 vaccine development

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          Abstract

          The past year has seen the rapid global spread of SARS-CoV-2—the virus responsible for the ongoing COVID-19 pandemic. While non-pharmaceutical interventions have been the mainstay of epidemic control to date, vaccination is likely to constitute the definitive, long-term defence strategy against SARS-CoV-2 morbidity, mortality, and transmission, offering the best hope of a return to normal life. The urgent need for effective vaccines has prompted vaccine developers to pivot towards COVID-19, resulting in rapid growth of preclinical candidates (appendix) and an accelerated vaccine development pipeline. 1 In response to the unfolding pandemic and the extraordinary volume and pace of global vaccine research, we developed an online, interactive vaccine tracker hosted by the Vaccine Centre (VaC) at the London School of Hygiene and Tropical Medicine (LSHTM; London, UK). Launched in April 2020, this tracker aims to collate up-to-date information on all COVID-19 vaccine candidates from inception through to deployment, enabling policy makers, researchers, and the public to keep informed of the rapid developments. All code and underlying data for the tracker are freely available and are updated regularly through a Github repository. The LSHTM VaC tracker is focused on presenting a comprehensive and up-to-date overview of the global vaccine landscape, provided in a user-friendly and engaging format. The landscape feature is updated weekly, collating information on all preclinical and clinical candidates from the WHO COVID-19 vaccine landscape 2 and the Milken Institute's tracker, 3 as well as information provided directly by developers. An interactive timeline displays clinical trial dates and locations for each candidate, providing users with the option to subset vaccines by platform and development phase. To summarise key metrics of active and planned vaccine trials, the tracker includes a clinical trials database that captures specifications such as locations, dates, size, study design, masking, randomisation, and recruitment status of registered COVID-19 vaccine trials in humans. Newly registered or updated protocols are identified weekly via the US National Institutes of Health's clinical trials database and the WHO landscape. 2 For candidates undergoing phase 3 efficacy testing, clinical trial metrics are fed into an interactive trial map, which displays the global distribution of trials alongside the national case counts in each trial location (derived from the Johns Hopkins University real-time COVID-19 dashboard 4 ), helping place studies within their local epidemiological context. As data from clinical trials started to become available in peer-reviewed journals and on preprint servers, the need for a single resource presenting results in a standardised and succinct format became increasingly evident. Accordingly, we launched a living review feature on Aug 24, 2020, which allows users to visualise and compare vaccine trial attributes, safety, immunogenicity, and efficacy data from each published report. The living review is updated through weekly searches of medRxiv and PubMed, using the terms “(coronavirus OR COVID OR SARS*) AND vaccin* AND (trial OR phase)”. Descriptive and quantitative data on study design, participant characteristics, safety, immunogenicity, and efficacy are extracted by a single reviewer and then verified by a second. For each study, we present the dosing regimens, randomisation and masking procedures, general inclusion criteria, and the inclusion of pregnant women and HIV-positive individuals. We report any vaccine-related serious adverse events, regardless of prevalence, and any non-serious adverse events with prevalence of 25% or more in one or more study groups. Antibody levels at baseline and 28 days after the final dose (or the nearest available time point) are extracted for each vaccine dosing regimen. Primary outcomes of interest include antigen-specific IgG and neutralising antibodies against wild-type SARS-CoV-2 or pseudovirus, or both. Data on CD4-positive and CD8-positive T-cell responses and any T helper type 1 versus T helper type 2 bias are reported where available. For phase 3 trials, we present efficacy against virologically confirmed symptomatic COVID-19, severe COVID-19, and asymptomatic SARS-CoV-2 infection, stratified by age, ethnicity, or comorbidity status where available. Finally, with an increasing number of candidates moving from clinical testing to real-world roll-out—albeit not always after publication of phase 3 data—we recently incorporated an implementation feature on the LSHTM VaC tracker. This feature summarises information on vaccine storage requirements, manufacture projections, approval or licensure status, and ONE's Vaccine Access Test scores. 5 For each vaccine, we also display the number of countries reporting roll-out based on statistics compiled by Our World in Data. 6 As such, the LSHTM VaC tracker summarises all stages of the COVID-19 vaccine development pipeline, from preclinical development through to licensure and implementation. The COVID-19 pandemic has spurred advances in vaccine development at an extraordinary scale, and the LSHTM VaC tracker provides a clear testimony of this progress. As of Jan 26, 2021, the COVID-19 vaccine landscape featured 291 candidates (appendix). Our clinical trials database includes 156 registered studies spanning 70 separate candidates, of which 20 are currently undergoing phase 3 efficacy testing (figure ). Innovations in platforms, manufacturing, delivery, and trial design have been notable, for example RNA-based, plant-derived, and intranasal vaccines, and combined phase 1/2 or 2/3 trials. 31 published reports spanning 18 separate candidates have shown encouraging safety and immunogenicity profiles for inactivated (n=5), non-replicating viral vector (n=4), RNA (n=3), protein subunit (n=4), DNA (n=1), and virus-like particle (n=1) vaccines; and three published reports have confirmed the potential of vaccines to yield robust protective efficacy against COVID-19. We can only hope that further candidates follow—as the scale of the pandemic escalates, the urgent need for multiple effective vaccines and their equitable global distribution is clear. Figure Status of the COVID-19 vaccine landscape Includes vaccine candidates in phase 3 testing, use, or both as of Jan 26, 2021. AZLB=Anhui Zhifei Longcom Biopharmaceutical. nr=non-replicating. RIBSP=Research Institute for Biological Safety Problems. VLP=virus-like particle. The rapid progress in COVID-19 vaccine development is a testament not only to the dedication and innovation of research teams, but also to the public who have volunteered for clinical testing. Active or planned trials include more than 690 000 individuals across the globe, and this number will grow as further studies commence. This altruism must be matched with clear and transparent information regarding COVID-19 vaccine safety, efficacy, and implementation policy decisions in the national and global context. The implications of the ongoing vaccine roll-out extend beyond COVID-19 and will set the tone for public confidence and enthusiasm regarding vaccination for decades to come.

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          An interactive web-based dashboard to track COVID-19 in real time

          In December, 2019, a local outbreak of pneumonia of initially unknown cause was detected in Wuhan (Hubei, China), and was quickly determined to be caused by a novel coronavirus, 1 namely severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2). The outbreak has since spread to every province of mainland China as well as 27 other countries and regions, with more than 70 000 confirmed cases as of Feb 17, 2020. 2 In response to this ongoing public health emergency, we developed an online interactive dashboard, hosted by the Center for Systems Science and Engineering (CSSE) at Johns Hopkins University, Baltimore, MD, USA, to visualise and track reported cases of coronavirus disease 2019 (COVID-19) in real time. The dashboard, first shared publicly on Jan 22, illustrates the location and number of confirmed COVID-19 cases, deaths, and recoveries for all affected countries. It was developed to provide researchers, public health authorities, and the general public with a user-friendly tool to track the outbreak as it unfolds. All data collected and displayed are made freely available, initially through Google Sheets and now through a GitHub repository, along with the feature layers of the dashboard, which are now included in the Esri Living Atlas. The dashboard reports cases at the province level in China; at the city level in the USA, Australia, and Canada; and at the country level otherwise. During Jan 22–31, all data collection and processing were done manually, and updates were typically done twice a day, morning and night (US Eastern Time). As the outbreak evolved, the manual reporting process became unsustainable; therefore, on Feb 1, we adopted a semi-automated living data stream strategy. Our primary data source is DXY, an online platform run by members of the Chinese medical community, which aggregates local media and government reports to provide cumulative totals of COVID-19 cases in near real time at the province level in China and at the country level otherwise. Every 15 min, the cumulative case counts are updated from DXY for all provinces in China and for other affected countries and regions. For countries and regions outside mainland China (including Hong Kong, Macau, and Taiwan), we found DXY cumulative case counts to frequently lag behind other sources; we therefore manually update these case numbers throughout the day when new cases are identified. To identify new cases, we monitor various Twitter feeds, online news services, and direct communication sent through the dashboard. Before manually updating the dashboard, we confirm the case numbers with regional and local health departments, including the respective centres for disease control and prevention (CDC) of China, Taiwan, and Europe, the Hong Kong Department of Health, the Macau Government, and WHO, as well as city-level and state-level health authorities. For city-level case reports in the USA, Australia, and Canada, which we began reporting on Feb 1, we rely on the US CDC, the government of Canada, the Australian Government Department of Health, and various state or territory health authorities. All manual updates (for countries and regions outside mainland China) are coordinated by a team at Johns Hopkins University. The case data reported on the dashboard aligns with the daily Chinese CDC 3 and WHO situation reports 2 for within and outside of mainland China, respectively (figure ). Furthermore, the dashboard is particularly effective at capturing the timing of the first reported case of COVID-19 in new countries or regions (appendix). With the exception of Australia, Hong Kong, and Italy, the CSSE at Johns Hopkins University has reported newly infected countries ahead of WHO, with Hong Kong and Italy reported within hours of the corresponding WHO situation report. Figure Comparison of COVID-19 case reporting from different sources Daily cumulative case numbers (starting Jan 22, 2020) reported by the Johns Hopkins University Center for Systems Science and Engineering (CSSE), WHO situation reports, and the Chinese Center for Disease Control and Prevention (Chinese CDC) for within (A) and outside (B) mainland China. Given the popularity and impact of the dashboard to date, we plan to continue hosting and managing the tool throughout the entirety of the COVID-19 outbreak and to build out its capabilities to establish a standing tool to monitor and report on future outbreaks. We believe our efforts are crucial to help inform modelling efforts and control measures during the earliest stages of the outbreak.
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            SARS-CoV-2 vaccines in development

            Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) was first reported in late 2019 in China and is the causative agent of the coronavirus disease 2019 (COVID-19) pandemic. To mitigate the effects of the virus on public health, the economy and society, a vaccine is urgently needed. Here I review the development of vaccines against SARS-CoV-2. Development was initiated when the genetic sequence of the virus became available in early January 2020, and has moved at an unprecedented speed: a phase I trial started in March 2020 and there are currently more than 180 vaccines at various stages of development. Data from phase I and phase II trials are already available for several vaccine candidates, and many have moved into phase III trials. The data available so far suggest that effective and safe vaccines might become available within months, rather than years.
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              Author and article information

              Journal
              Lancet Glob Health
              Lancet Glob Health
              The Lancet. Global Health
              The Author(s). Published by Elsevier Ltd.
              2214-109X
              2 March 2021
              May 2021
              2 March 2021
              : 9
              : 5
              : e590-e592
              Affiliations
              [a ]UCL Institute of Health Informatics, University College London, London, UK
              [b ]The Vaccine Centre, London School of Hygiene and Tropical Medicine, London WC1E 7HT, UK
              [c ]Vaccines & Immunity Theme, MRC Unit The Gambia at the London School of Hygiene and Tropical Medicine, Banjul, The Gambia
              Article
              S2214-109X(21)00043-7
              10.1016/S2214-109X(21)00043-7
              8049589
              33667404
              f712d7e7-3b6b-4b5d-8b79-36b2c6fddedc
              © 2021 The Author(s). Published by Elsevier Ltd. This is an Open Access article under the CC BY-NC-ND 4.0 license

              Since January 2020 Elsevier has created a COVID-19 resource centre with free information in English and Mandarin on the novel coronavirus COVID-19. The COVID-19 resource centre is hosted on Elsevier Connect, the company's public news and information website. Elsevier hereby grants permission to make all its COVID-19-related research that is available on the COVID-19 resource centre - including this research content - immediately available in PubMed Central and other publicly funded repositories, such as the WHO COVID database with rights for unrestricted research re-use and analyses in any form or by any means with acknowledgement of the original source. These permissions are granted for free by Elsevier for as long as the COVID-19 resource centre remains active.

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