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      Integrative taxonomic reassessment of Odontophrynus populations in Argentina and phylogenetic relationships within Odontophrynidae (Anura)

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          Abstract

          Amphibians are the most vulnerable vertebrates to biodiversity loss mediated by habitat destruction, climate change and diseases. Informed conservation management requires improving the taxonomy of anurans to assess reliably the species’ geographic range. The genus Odontophrynus that is geographically refined to Argentina, Bolivia, Brazil, Uruguay and Paraguay includes currently 12 nominal species with many populations of uncertain taxonomic assignment and subsequently unclear geographic ranges. In this study, we applied integrative taxonomic methods combining molecular (mitochondrial 16S gene), allozyme, morphological and bioacoustic data to delimit species of the genus Odontophrynus sampled from throughout Argentina where most species occur. The combined evidence demonstrates one case of cryptic diversity and another of overestimation of species richness. The populations referred to as O. americanus comprise at least three species. In contrast, O. achalensis and O. barrioi represent junior synonyms of the phenotypically plastic species O. occidentalis. We conclude that each of the four species occurring in Argentina inhabits medium to large areas. The Red List classification is currently “Least Concern”. We also propose a phylogenetic hypothesis for the genus and associated genera Macrogenioglottus and Proceratophrys (Odontophrynidae).

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          The integrative future of taxonomy

          Background Taxonomy is the biological discipline that identifies, describes, classifies and names extant and extinct species and other taxa. Nowadays, species taxonomy is confronted with the challenge to fully incorporate new theory, methods and data from disciplines that study the origin, limits and evolution of species. Results Integrative taxonomy has been proposed as a framework to bring together these conceptual and methodological developments. Here we review perspectives for an integrative taxonomy that directly bear on what species are, how they can be discovered, and how much diversity is on Earth. Conclusions We conclude that taxonomy needs to be pluralistic to improve species discovery and description, and to develop novel protocols to produce the much-needed inventory of life in a reasonable time. To cope with the large number of candidate species revealed by molecular studies of eukaryotes, we propose a classification scheme for those units that will facilitate the subsequent assembly of data sets for the formal description of new species under the Linnaean system, and will ultimately integrate the activities of taxonomists and molecular biologists.
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            Markov Chasin Monte Carlo Algorithms for the Bayesian Analysis of Phylogenetic Trees

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              Vast underestimation of Madagascar's biodiversity evidenced by an integrative amphibian inventory.

              Amphibians are in decline worldwide. However, their patterns of diversity, especially in the tropics, are not well understood, mainly because of incomplete information on taxonomy and distribution. We assess morphological, bioacoustic, and genetic variation of Madagascar's amphibians, one of the first near-complete taxon samplings from a biodiversity hotspot. Based on DNA sequences of 2,850 specimens sampled from over 170 localities, our analyses reveal an extreme proportion of amphibian diversity, projecting an almost 2-fold increase in species numbers from the currently described 244 species to a minimum of 373 and up to 465. This diversity is widespread geographically and across most major phylogenetic lineages except in a few previously well-studied genera, and is not restricted to morphologically cryptic clades. We classify the genealogical lineages in confirmed and unconfirmed candidate species or deeply divergent conspecific lineages based on concordance of genetic divergences with other characters. This integrative approach may be widely applicable to improve estimates of organismal diversity. Our results suggest that in Madagascar the spatial pattern of amphibian richness and endemism must be revisited, and current habitat destruction may be affecting more species than previously thought, in amphibians as well as in other animal groups. This case study suggests that worldwide tropical amphibian diversity is probably underestimated at an unprecedented level and stresses the need for integrated taxonomic surveys as a basis for prioritizing conservation efforts within biodiversity hotspots.
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                Author and article information

                Contributors
                Journal
                PeerJ
                PeerJ
                PeerJ
                PeerJ
                PeerJ
                PeerJ Inc. (San Diego, USA )
                2167-8359
                25 February 2019
                2019
                : 7
                : e6480
                Affiliations
                [1 ]Department of Ecology, National University of Rio Cuarto , Rio Cuarto (Cordoba), Argentina
                [2 ]Department of Biology, Institute of Integrated Sciences, University of Koblenz-Landau , Koblenz, Germany
                Author information
                http://orcid.org/0000-0002-3533-5287
                http://orcid.org/0000-0001-8735-8723
                Article
                6480
                10.7717/peerj.6480
                6394351
                f7538699-6fa0-4757-9fa0-63435dae571a
                © 2019 Martino et al.

                This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ) and either DOI or URL of the article must be cited.

                History
                : 8 October 2018
                : 20 January 2019
                Funding
                Funded by: German Academic Exchange Agency
                Award ID: DAAD: #A/96/05802; #A/03/22260
                Funded by: Secretary Research and Technology of National University of Río Cuarto
                Award ID: SECyT-UNRC: #PPI 18C/225
                Funded by: National Agency of Scientific and Technological Promotion
                Award ID: ANPCyT
                Funded by: Fund for Scientific and Technological Research (FONCyT)
                Award ID: 0932/2012
                Funded by: Ulrich Sinsch was funded by the German Academic exchange agency
                Award ID: DAAD: #961 501 027 3; #961 501 006 5
                Funded by: Volkswagenstiftung
                Award ID: #I/71 710
                Research was supported with grants from the German Academic Exchange Agency (DAAD: #A/96/05802; #A/03/22260), the Secretary Research and Technology of National University of Río Cuarto (SECyT-UNRC: #PPI 18C/225), National Agency of Scientific and Technological Promotion (ANPCyT), and Fund for Scientific and Technological Research (FONCyT), Grant PICT 0932/2012 to Adolfo L. Martino. Ulrich Sinsch was funded by the German Academic exchange agency (DAAD: #961 501 027 3; #961 501 006 5), and the Volkswagenstiftung (#I/71 710). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.
                Categories
                Biodiversity
                Evolutionary Studies
                Taxonomy
                Zoology

                integrative taxonomy,allozymes,advertisement call,species delimitation,macrogenioglottus,odontophrynus,morphometry,16s rrna sequences,proceratophrys

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