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      Ten Simple Rules for Cultivating Open Science and Collaborative R&D

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          Abstract

          How can we address the complexity and cost of applying science to societal challenges? Open science and collaborative R&D may help [1]–[3]. Open science has been described as “a research accelerator” [4]. Open science implies open access [5] but goes beyond it: “Imagine a connected online web of scientific knowledge that integrates and connects data, computer code, chains of scientific reasoning, descriptions of open problems, and beyond …. tightly integrated with a scientific social web that directs scientists' attention where it is most valuable, releasing enormous collaborative potential.” [1]. Open science and collaborative approaches are often described as open source, by analogy with open-source software such as the operating system Linux which powers Google and Amazon—collaboratively created software which is free to use and adapt, and popular for Internet infrastructure and scientific research [6], [7]. However, this use of “open source” is unclear. Some people use “open source” when a project's results are free to use, others when a project's process is highly collaborative [4]. It is clearer to classify open source and open science within a broader class of collaborative R&D, which can be defined as scalable collaboration (usually enabled by information technology) across organizational boundaries to solve R&D challenges [8]. Many approaches to open science and collaborative R&D have been tried [1], [9]. The Gene Wiki has created over 10,000 Wikipedia articles, and aims to provide one for every notable human gene [10]. The crowdsourcing platform InnoCentive has reportedly facilitated solutions to roughly half of the thousands of technical problems posed on the site, including many in life sciences such as the $1 million ALS Biomarker Prize [11]. Other examples include prizes (X-Prize [12]), scientific games (FoldIt [13]), and licensing schemes inspired by open-source software (BIOS [14]). Collaborative R&D approaches vary in openness [15]. In some approaches, the R&D process and outputs are open to all—for example, open-science projects like the Gene Wiki described above. In other approaches which demonstrate what might be called controlled collaboration, there are strong controls on who contributes and benefits—for example, computational platforms like Collaborative Drug Discovery or InnoCentive that support both commercial and nonprofit research [9], [11]. Collaborative approaches can unleash innovation from unforeseen sources, as with crowdsourcing health technologies [11]–[13], [16]. They may help in global challenges like drug development [17], as with India's OSDD (Open Source Drug Discovery) project that recruited over 7,000 volunteers [16] and an open-source drug synthesis project that improved an existing drug without increasing its cost [18]. If you want to apply open science and collaborative R&D, what principles are useful? We suggest Ten Simple Rules for Cultivating Open Science and Collaborative R&D. We also offer eight conversational interviews exploring life experiences that led to these rules (Box 1). Box 1. Conversations on Open Science and Collaborative R&D Many commentators have considered challenges in translating open science and collaborative methods to biomedical research [2]–[4], [9], [17], [20], [24], [26], [28], [29]. How can protecting intellectual property be balanced with freeing researchers to build on previous knowledge? If R&D results are collaboratively created and freely available, who will take responsibility for costly clinical trials and quality control? What will be the Linux of open-source R&D? To explore such challenges and convey life experiences in biomedical open science and collaborative R&D, we offer eight conversational interviews by the first author of this article as supplementary material. The conversations were done on behalf of the Results for Development Institute and are with: Alph Bingham, cofounder of InnoCentive (Text S1) Barry Bunin, CEO of Collaborative Drug Discovery (Text S2) Leslie Chan, open access pioneer and director of Bioline International (Text S3) Aled Edwards, director of the Structural Genomics Consortium (Text S4) Benjamin Good, coleader of the Gene Wiki initiative (Text S5) Bernard Munos, pharmaceutical innovation thought leader (Text S6) Zakir Thomas, director of India's Open Source Drug Discovery (OSDD) project (Text S7) Matt Todd, open science and drug development pioneer (Text S8) Rule 1: Get the Incentives Right—Learn from the Past Why should contributors take part in your project? Learn from incentives that have worked in mass collaborations and open-source software, such as reputation building, enjoyment, cooperatively solving interesting problems that are too hard to do alone, and jointly developing tools that benefit all developers [6], [7], [19]. Organizational incentives can include lowering costs, tapping external innovation, implementing novel business models such as selling complementary services, and jointly competing for public admiration or grant funding. Altruism can motivate collaboration, but frequently it is not the main reason [9]. With this in mind, align individual incentives with collective benefit [1]. Look to past and present precompetitive collaborations for ways to address intellectual property and competitive concerns [3]. Share attribution with contributors so they can advance their goals and demonstrate their capabilities. Rule 2: Make Your Controlled Collaborations Win-Win-Win Perhaps completely open science seems unsuitable to you, if for example you are engaged in market-driven R&D that must recoup investments. There are ways to benefit from open science and collaborative methods while retaining appropriate controls and the opportunity to provide public benefit. You, your partners, and the public can all benefit—a win-win-win situation. You might use computational platforms to supercharge information sharing with selected partners, including public-benefit initiatives that match your mission [9]. You might use crowdsourcing to overcome roadblocks by opening up chosen parts of your R&D process to new innovators [11]. Or you might make public selected data or software tools, exporting them to the open-source realm to gain from goodwill or quality improvement [3]. Sharing can make both business and social sense, whether in implementing open standards, collaborating precompetitively, or reducing duplication of effort [20]. Keep an eye open for opportunities to “do well by doing good” by structuring initiatives for private and public benefit [21]. Collaborative approaches can benefit both public and private sectors in collaborating across competitive boundaries, connecting problems with problem solvers, and cultivating a knowledge commons [1], [9]. Rule 3: Understand What Works—and What Doesn't You can save yourself frustration by not using an unsuitable collaborative method, be it a Wiki without an audience or a crowdsourced research challenge without focus [8]. Consider questions like: have you learned from others who have tried the method? Do you understand when the method fails, and what is necessary for it to work? Is there a good match between the method and your goals? Are you contributing your experiences and interesting failures back to the community, thus demonstrating thought leadership? If you are interested in more effective knowledge sharing, consider low-budget opportunities such as starting an online Q&A site about open science or collaborative R&D using a platform like StackExchange. There are also opportunities to help evaluate what really works—moving beyond anecdotal evidence to case studies and metrics. Rule 4: Lead as a Coach, Not a CEO The command-and-control style doesn't work well with contributors from diverse organizations, many of whom may be volunteers [22]. And as has been said of Linus Torvalds, the founder of the open-source operating system Linux, “Linus doesn't scale”: leaders of mass collaborations can become bottlenecks unless they encourage distributed workflows and leadership [7]. Be flexible about management (but strict about quality). Check your ego at the door—you're playing a team game and will be stronger when others want to contribute. Participants will feel more motivated if their contribution enriches a joint resource rather than just the leader. Can you give up exclusive ownership and credit to achieve with others what you cannot achieve alone? Rule 5: Diversify Your Contributors A powerful aspect of collaborative R&D is the potential diversity of the community—including students [16], patients [23], gamers [13], and researchers from lesser-known countries or institutions. You can use open science to attract diverse contributors by lowering barriers to participation, publicly tackling audacious challenges (see Rule 8), and making collaboration fun. Consider open licensing terms and joint or public ownership of selected outcomes to broaden your participant base [14], [15], [21], [24]. Encourage all community members to find ways to contribute that suit their abilities and inclinations. Can you reach past your usual partners, and make it easy for others to get up to speed with what you're doing? Are there opportunities for “citizen science,” perhaps through organizing many microcontributions [1], [13]? Rule 6: Diversify Your Customers Can you engage the broadest possible base as beneficiaries? The science that you do in the open spreads its benefits widely, and that can attract unexpected accolades and collaborators [1], [4]. Productively involving stakeholders can inform your research—for example, through participatory research strategies involving the people your efforts are meant to help [25]. Contributing to collaborative initiatives targeting human development challenges can motivate your team, and potentially lead to innovations that are transferable to for-profit markets. Neglected disease R&D is a case in point which seems particularly suitable for collaborative pilot projects, given its lower profits, humanitarian appeal, and need for new methods [26]. If your work is commercially driven, consider humanitarian licensing approaches that encourage nonprofit applications by others to poorer demographics [2], [21]. Rule 7: Don't Reinvent the Wheel The more you can use what already exists, the greater your effectiveness will be. Are there lab and computational resources that could be used when otherwise idle? Can you find people already working on elements of your problem, and organize their collective work? Before starting a new initiative, have you explored and considered joining existing ones? Piggybacking on active efforts eases prototyping and gathering enthusiastic initial users. Build on the cumulative stockpile of past open initiatives (see Rules 1 and 3). Rule 8: Think Big For projects hoping to harness the power of mass collaboration, a major challenge can be attracting a large community of contributors. Many of the best mass collaborations orient around seemingly audacious goals like: “build a free encyclopedia of all the world's knowledge” (Wikipedia), “develop a review article for every human gene” (Gene Wiki), and “build a new operating system” (Linux). Establishing a driving, high-level purpose will help spread the idea of your project and motivate people to come have a look and see what they can do. Be ready to scale with success. Rule 9: Encourage Supportive Policies and Tools Can you cultivate open science and collaborative R&D by helping to make them part of “standard operating procedure”? For example, can you encourage institutional data sharing [24]? Can you build a profiling platform of collaborative initiatives, summarizing what they have achieved and what types of collaborators they are seeking? Do you have opportunities to adopt appropriate policies in your own organization or field? A case study to learn from is the spread of open access from wishful thinking to widespread fact [5]. Rule 10: Grow the Commons As intellectual property debates illustrate, there are legitimate differences of opinion on how best to motivate innovators' investments to generate new knowledge [21], [26]. But in the long run, sharing more knowledge and tools boosts both for-profit and nonprofit research [2], [3]. This growing shared resource of knowledge and tools—“the commons”—is the product of centuries of striving. It depends on cumulative win-win-win collaborations spanning organizations, nations, and generations. Can you find ways to advance your interests while remaining part of this larger narrative [1], [5], [19], [27]? Supporting Information Text S1 A conversation with Alph Bingham, cofounder of InnoCentive. (PDF) Click here for additional data file. Text S2 A conversation with Barry Bunin, CEO of Collaborative Drug Discovery. (PDF) Click here for additional data file. Text S3 A conversation with Leslie Chan, open access pioneer and director of Bioline International. (PDF) Click here for additional data file. Text S4 A conversation with Aled Edwards, director of the Structural Genomics Consortium. (PDF) Click here for additional data file. Text S5 A conversation with Benjamin Good, coleader of the Gene Wiki initiative. (PDF) Click here for additional data file. Text S6 A conversation with Bernard Munos, pharmaceutical innovation thought leader. (PDF) Click here for additional data file. Text S7 A conversation with Zakir Thomas, director of India's Open Source Drug Discovery (OSDD) project. (PDF) Click here for additional data file. Text S8 A conversation with Matt Todd, open science and drug development pioneer. (PDF) Click here for additional data file.

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          Accelerated clinical discovery using self-reported patient data collected online and a patient-matching algorithm.

          Patients with serious diseases may experiment with drugs that have not received regulatory approval. Online patient communities structured around quantitative outcome data have the potential to provide an observational environment to monitor such drug usage and its consequences. Here we describe an analysis of data reported on the website PatientsLikeMe by patients with amyotrophic lateral sclerosis (ALS) who experimented with lithium carbonate treatment. To reduce potential bias owing to lack of randomization, we developed an algorithm to match 149 treated patients to multiple controls (447 total) based on the progression of their disease course. At 12 months after treatment, we found no effect of lithium on disease progression. Although observational studies using unblinded data are not a substitute for double-blind randomized control trials, this study reached the same conclusion as subsequent randomized trials, suggesting that data reported by patients over the internet may be useful for accelerating clinical discovery and evaluating the effectiveness of drugs already in use.
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            Open science is a research accelerator.

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              Ten Simple Rules for a Successful Collaboration

              Scientific research has always been a collaborative undertaking, and this is particularly true today. For example, between 1981 and 2001, the average number of coauthors on a paper for the Proceedings of the National Academy of Sciences U S A rose from 3.9 to 8.4 [1]. Why the increase? Biology has always been considered the study of living systems; many of us now think of it as the study of complex systems. Understanding this complexity requires experts in many different domains. In short, these days success in being a biologist depends more on one's ability to collaborate than ever before. The Medical Research Centers in the United Kingdom figured this out long ago, and the new Janelia Farm research campus of the Howard Hughes Medical Institute in the United States has got the idea, as it strongly promotes intra- and inter-institutional collaborations [2]. Given that collaboration is crucial, how do you go about picking the right collaborators, and how can you best make the collaboration work? Here are ten simple rules based on our experience that we hope will help. Additional suggestions can be found in the references [3,4]. Above all, keep in mind that these rules are for both you and your collaborators. Always remember to treat your collaborators as you would want to be treated yourself—empathy is key. Rule 1: Do Not Be Lured into Just Any Collaboration Learn to say no, even if it is to an attractive grant that would involve significant amounts of money and/or if it is a collaboration with someone more established and well-known. It is easier to say no at the beginning—the longer an ill-fated collaboration drags on, the harder it is to sever, and the worse it will be in the end. Enter a collaboration because of a shared passion for the science, not just because you think getting that grant or working with this person would look good on your curriculum vitae. Attending meetings is a perfect opportunity to interact with people who have shared interests [5]. Take time to consider all aspects of the potential collaboration. Ask yourself, will this collaboration really make a difference in my research? Does this grant constitute a valid motivation to seek out that collaboration? Do I have the expertise required to tackle the proposed tasks? What priority will this teamwork have for me? Will I be able to deliver on time? If the answer is no for even one of these questions, the collaboration could be ill-fated. Enter a collaboration because of a shared passion for the science . . . Rule 2: Decide at the Beginning Who Will Work on What Tasks Carefully establishing the purpose of the collaboration and delegating responsibilities is priceless. Often the collaboration will be defined by a grant. In that case, revisit the specific aims regularly and be sure the respective responsibilities are being met. Otherwise, consider writing a memo of understanding, or, if that is too formal, at least an e-mail about who is responsible for what. Given the delegation of tasks, discuss expectations for authorship early in the work. Having said that, leave room for evolution over the course of the collaboration. New ideas will arise. Have a mutual understanding up-front such that these ideas can be embraced as an extension of the original collaboration. Discuss adjustments to the timelines and the order of authors on the final published paper, accordingly. In any case, be comfortable with the anticipated credit you will get from the work. The history of science is littered with stories of unacknowledged contributions. Rule 3: Stick to Your Tasks Scientific research is such that every answered question begs a number of new questions to be answered. Do not digress into these new questions without first discussing them with your collaborators. Do not change your initial plans without discussing the change with your collaborators. Thinking they will be pleased with your new approach or innovation is often misplaced and can lead to conflict. Rule 4: Be Open and Honest Share data, protocols, materials, etc., and make papers accessible prior to publication. Remain available. A trusting relationship is important for the collaborative understanding of the problem being tackled and for the subsequent joint thinking throughout the evolution of the collaboration. Rule 5: Feel Respect, Get Respect If you do not have respect for the scientific work of your collaborators, you should definitely not be collaborating. Respect here especially means playing by Rules 2–4. If you do not respect your collaborators, it will show. Likewise, if they don't respect you. Look for the signs. The signs will depend on the personality of your collaborators and range from being aggressive to being passive–aggressive. For example, getting your tasks done in a timely manner should be your priority. There is nothing more frustrating for your collaborators than to have to throttle their progress while they are waiting for you to send them your data. Showing respect would be to inform your collaborator when you cannot make a previously agreed-upon deadline, so that other arrangements can be made. Rule 6: Communicate, Communicate, and Communicate Consistent communication with your collaborators is the best way to make sure the partnership is going in the planned direction. Nothing new here, it is the same as for friendship and marriage. Communication is always better face-to-face if possible, for example by traveling to meet your collaborators, or by scheduling discussion related to your collaborations during conferences that the people involved will attend. Synchronous communication by telephone or video teleconferencing is preferred over asynchronous collaboration by e-mail (data could be exchanged by e-mail prior to a call so that everyone can refer to the data while talking). Rule 7: Protect Yourself from a Collaboration That Turns Sour The excitement of a new collaboration can often quickly dissipate as the first hurdles to any new project appear. The direct consequence can be a progressive lack of interest and focus to get the job done. To avoid the subsequent frustrations and resentment that could even impact your work in general, give three chances to your collaborators to get back on track. After all, your collaborators could just be having a difficult time for reasons outside of their control and unanticipated at the time the collaboration started. After three chances, if it feels like the collaboration cannot be saved, move on. At that point try to minimize the role of your collaborators in your work: think carefully about the most basic help you need from them and get it while you can (e.g., when having a phone call or a meeting in person). You may still need to deal with the co-authorship, but hopefully for one paper only! Rule 8: Always Acknowledge and Cite Your Collaborators This applies as soon as you mention preliminary results. Be clear on who undertook what aspect of the work being reported. Additionally, citing your collaborators can reveal your dynamism and your skills at developing prosperous professional relationships. This skill will be valued by your peers throughout your career. Rule 9: Seek Advice from Experienced Scientists Even though you may not encounter severe difficulties that would result in the failure of the partnership, each collaboration will come with a particular set of challenges. To overcome these obstacles, interact with colleagues not involved in the work, such as your former advisors or professors in your department who have probably been through all kinds of collaborations. They will offer insightful advice that will help you move beyond the current crisis. Remember, however, that a crisis can occasionally lead to a breakthrough. Do not, therefore, give up on the collaboration too easily. Rule 10: If Your Collaboration Satisfies You, Keep It Going Ever wondered why a pair of authors has published so many papers together? Well, it is like any good recipe: when you find one that works, you cook it again and again. Successful teamwork will tend to keep flourishing—the first paper will stimulate deeper and/or broader studies that will in turn lead to more papers. As you get to know your collaborators, you begin to understand work habits, strengths but also weaknesses, as well as respective areas of knowledge. Accepting these things and working together can make the work advance rapidly, but do not hurry: it takes time and effort from both sides to get to this point. Collaborations often come unexpectedly, just like this one. One of us (PEB) as Editor-in-Chief was approached not just with the idea for these Ten Rules, but with a draft set of rules that needed only minor reworking. As you can see, we have obeyed Rule 8. 
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                Author and article information

                Contributors
                Role: Editor
                Journal
                PLoS Comput Biol
                PLoS Comput. Biol
                plos
                ploscomp
                PLoS Computational Biology
                Public Library of Science (San Francisco, USA )
                1553-734X
                1553-7358
                September 2013
                September 2013
                26 September 2013
                : 9
                : 9
                : e1003244
                Affiliations
                [1 ]Waterloo Institute for Complexity and Innovation, Waterloo, Ontario, Canada
                [2 ]Results for Development Institute, Washington, D.C., United States of America
                [3 ]Department of Molecular and Experimental Medicine, Scripps Research Institute, La Jolla, California, United States of America
                [4 ]School of Chemistry, University of Sydney, Sydney, New South Wales, Australia
                [5 ]Structural Genomics Consortium, University of Toronto, Toronto, Ontario, Canada
                [6 ]Department of Social Sciences, University of Toronto Scarborough, Toronto, Ontario, Canada
                [7 ]Collaborative Drug Discovery, Burlingame, California, United States of America
                [8 ]Council of Scientific and Industrial Research, New Delhi, India
                [9 ]Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, California, United States of America
                Whitehead Institute, United States of America
                Author notes

                The authors have declared that no competing interests exist.

                Article
                PCOMPBIOL-D-13-01033
                10.1371/journal.pcbi.1003244
                3784487
                24086123
                f7a023a3-2359-4fff-a5b6-2c651bf9abcf
                Copyright @ 2013

                This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

                History
                Page count
                Pages: 4
                Funding
                This article was made possible by support to HM and AR from a grant by the Bill & Melinda Gates Foundation to the Results for Development Institute. The funders had no role in the preparation of the manuscript.
                Categories
                Editorial

                Quantitative & Systems biology
                Quantitative & Systems biology

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