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      Cryo-EM structure of a transthyretin-derived amyloid fibril from a patient with hereditary ATTR amyloidosis

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          Abstract

          ATTR amyloidosis is one of the worldwide most abundant forms of systemic amyloidosis. The disease is caused by the misfolding of transthyretin protein and the formation of amyloid deposits at different sites within the body. Here, we present a 2.97 Å cryo electron microscopy structure of a fibril purified from the tissue of a patient with hereditary Val30Met ATTR amyloidosis. The fibril consists of a single protofilament that is formed from an N-terminal and a C-terminal fragment of transthyretin. Our structure provides insights into the mechanism of misfolding and implies the formation of an early fibril state from unfolded transthyretin molecules, which upon proteolysis converts into mature ATTR amyloid fibrils.

          Abstract

          Systemic amyloidosis of the ATTR is one of the most abundant forms of systemic amyloidosis and caused by misfolding of the circulating blood protein transthyretin (TTR). Here the authors present the cryo-EM structure of patient-derived Val30Met ATTR amyloid fibrils which reveals that the protofilament consists of an N-terminal and a C-terminal TTR fragment and discuss implications for the mechanism of misfolding.

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          Common core structure of amyloid fibrils by synchrotron X-ray diffraction.

          Tissue deposition of normally soluble proteins as insoluble amyloid fibrils is associated with serious diseases including the systemic amyloidoses, maturity onset diabetes, Alzheimer's disease and transmissible spongiform encephalopathy. Although the precursor proteins in different diseases do not share sequence homology or related native structure, the morphology and properties of all amyloid fibrils are remarkably similar. Using intense synchrotron sources we observed that six different ex vivo amyloid fibrils and two synthetic fibril preparations all gave similar high-resolution X-ray fibre diffraction patterns, consistent with a helical array of beta-sheets parallel to the fibre long axis, with the strands perpendicular to this axis. This confirms that amyloid fibrils comprise a structural superfamily and share a common protofilament substructure, irrespective of the nature of their precursor proteins. Copyright 1997 Academic Press Limited.
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            Helical reconstruction in RELION

            We describe a new implementation for the reconstruction of helical assemblies in the empirical Bayesian framework of RELION. Our approach calculates optimal linear filters for the 3D reconstruction by embedding helical symmetry operators in Fourier-space, and deals with deviations from perfect helical symmetry through Gaussian-shaped priors on the orientations of individual segments. By incorporating our approach into the standard pipeline for single-particle analysis in RELION, our implementation aims to be easily accessible for non-experienced users. Although our implementation does not solve the problem that grossly incorrect structures can be obtained when the wrong helical symmetry is imposed, we show for four different test cases that it is capable of reconstructing structures to near-atomic resolution.
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              Environment and exposure to solvent of protein atoms. Lysozyme and insulin.

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                Author and article information

                Contributors
                marcus.faendrich@uni-ulm.de
                Journal
                Nat Commun
                Nat Commun
                Nature Communications
                Nature Publishing Group UK (London )
                2041-1723
                1 November 2019
                1 November 2019
                2019
                : 10
                : 5008
                Affiliations
                [1 ]ISNI 0000 0004 1936 9748, GRID grid.6582.9, Institute of Protein Biochemistry, , Ulm University, ; 89081 Ulm, Germany
                [2 ]ISNI 0000 0004 1936 9748, GRID grid.6582.9, Core Unit Mass Spectrometry and Proteomics, , Ulm University, ; 89081 Ulm, Germany
                [3 ]ISNI 0000 0001 2290 1502, GRID grid.9464.f, Institute of Microbiology, , University of Hohenheim, ; 70599 Stuttgart, Germany
                [4 ]GRID grid.5963.9, Institute for Neuropathology, Faculty of Medicine, , University of Freiburg, ; 79106 Freiburg, Germany
                [5 ]ISNI 0000 0004 1936 9457, GRID grid.8993.b, Department of Immunology, Genetics, and Pathology, , Uppsala University, ; Uppsala, SE-751 85 Sweden
                [6 ]ISNI 0000000123222966, GRID grid.6936.a, Department of Physics, , Technical University Munich, ; 85748 Garching, Germany
                Author information
                http://orcid.org/0000-0001-5697-2608
                http://orcid.org/0000-0002-4571-8812
                http://orcid.org/0000-0002-2756-4995
                Article
                13038
                10.1038/s41467-019-13038-z
                6825171
                31676763
                f93d69c2-9906-4f77-bc8b-bc60fe0606cf
                © The Author(s) 2019

                Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

                History
                : 2 August 2019
                : 17 October 2019
                Funding
                Funded by: FundRef https://doi.org/10.13039/501100001659, Deutsche Forschungsgemeinschaft (German Research Foundation);
                Award ID: SCHM 3276/1
                Award Recipient :
                Categories
                Article
                Custom metadata
                © The Author(s) 2019

                Uncategorized
                biochemistry,prions,protein folding,cryoelectron microscopy
                Uncategorized
                biochemistry, prions, protein folding, cryoelectron microscopy

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