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      The little Aplysia coming of age: from one species to a complex of species complexes in Aplysia parvula (Mollusca: Gastropoda: Heterobranchia)

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          Abstract

          The widespread sea hare species Aplysia parvula includes four genetically distinct lineages, containing a total of ten different species. While the four lineages can be differentiated by their external characteristics, species in each clade are often morphologically indistinguishable. A review of literature and type material revealed that several available names exist for species recognized herein: Aplysia parvula is retained for a species from the north-eastern Atlantic; A. atromarginata, A. elongata, A. nigrocincta and A. japonica are resurrected for species from the western Pacific Ocean, the Hawaiian Islands, the Indian and western Pacific Oceans, and Japan and Korea, respectively. Two new species names are introduced for animals from the eastern Pacific, and the Atlantic and Indian Oceans. Mitochondrial sequences from Mediterranean and eastern Atlantic specimens identified as A. parvula, resulted to be A. punctata. However, two specimens were heterozygotes of histone H3 alleles of A. punctata and of a new Atlantic species described herein, suggesting they could be hybrids. These results contradict the hypothesis that the Mediterranean was colonized by A. parvula. If an invasion occurred, it was a limited introgression of nDNA from an Atlantic species into native A. punctata populations.

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          Most cited references55

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          seqphase: a web tool for interconverting phase input/output files and fasta sequence alignments.

          J-F Flot (2009)
          The program phase is widely used for Bayesian inference of haplotypes from diploid genotypes; however, manually creating phase input files from sequence alignments is an error-prone and time-consuming process, especially when dealing with numerous variable sites and/or individuals. Here, a web tool called seqphase is presented that generates phase input files from fasta sequence alignments and converts phase output files back into fasta. During the production of the phase input file, several consistency checks are performed on the dataset and suitable command line options to be used for the actual phase data analysis are suggested. seqphase was written in perl and is freely accessible over the Internet at the address http://www.mnhn.fr/jfflot/seqphase. © 2009 Blackwell Publishing Ltd.
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            Gene Trees and Species Trees: Molecular Systematics as One-Character Taxonomy

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              TCS: estimating gene genealogies

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                Author and article information

                Contributors
                (View ORCID Profile)
                Journal
                Zoological Journal of the Linnean Society
                Oxford University Press (OUP)
                0024-4082
                1096-3642
                October 2019
                September 30 2019
                June 01 2019
                October 2019
                September 30 2019
                June 01 2019
                : 187
                : 2
                : 279-330
                Affiliations
                [1 ]Department of Biological Sciences, California State Polytechnic University Pomona, Pomona, California, USA
                [2 ]Department of Integrative Marine Ecology, Stazione Zoologica Anton Dohrn, Napoli, Italy
                [3 ]Departamento de Invertebrados, Museu Nacional, Universidade Federal do Rio de Janeiro, Rio de Janeiro, RJ, Brazil
                [4 ]SNSB-Zoologische Staatssammlung München, München, Germany
                [5 ]Museo de Zoología, Escuela de Biología, Universidad de Costa Rica, San Pedro de Montes de Oca, San José, Costa Rica
                [6 ]Dipartimento di Biologia, Università di Pisa, Pisa, Italy
                [7 ]Department of Marine Science, University of the Aegean, University Hill, Lesvos, Mytiline, Greece
                [8 ]Departamento de Biología, Universidad Autónoma de Madrid, Madrid, Spain
                [9 ]AMBRD Laboratories, Hanimefendi Sok, Istanbul, Turkey
                [10 ]Instituto Universitario de Investigación Marina (INMAR), Campus de Excelencia Internacional del Mar (CEI·MAR), Universidad de Cádiz, Puerto Real (Cádiz), Spain
                [11 ]Department of Invertebrate Zoology, California Academy of Sciences, San Francisco, California, USA
                [12 ]Centro de Investigaciones Costeras Universidad de Atacama (CIC-UDA), Universidad de Atacama, Atacama, Chile
                [13 ]Laboratorio de Biología Marina, Facultad de Ciencias y Filosofía, Universidad Peruana, Cayetano Heredia, Lima, Peru
                Article
                10.1093/zoolinnean/zlz028
                fa31d29d-e793-42d7-a64d-1602c231695e
                © 2019

                https://academic.oup.com/journals/pages/open_access/funder_policies/chorus/standard_publication_model

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