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      Comparison of Biomarker Modalities for Predicting Response to PD-1/PD-L1 Checkpoint Blockade : A Systematic Review and Meta-analysis

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          Abstract

          What is the relative diagnostic accuracy of different biomarker assay modalities in predicting clinical response to anti–PD-1/PD-L1 (programmed cell death 1/programmed cell death ligand 1) therapy? In this systematic review and meta-analysis involving tumor specimens from 8135 patients, multiplex immunohistochemistry/immunofluorescence (mIHC/IF) had significantly higher diagnostic accuracy than PD-L1 IHC, tumor mutational burden, or gene expression profiling in predicting clinical response to anti–PD-1/PD-L1 therapy and was similar to multimodality cross-platform composite approaches, such as PD-L1 IHC + tumor mutational burden. Multiplex immunohistochemistry/IF facilitates quantification of protein coexpression on immune cell subsets and assessment of their spatial arrangements; initial findings suggest that mIHC/IF has diagnostic accuracy comparable to multimodality cross-platform composite approaches in predicting response to anti–PD-1/PD-L1. This systematic review and meta-analysis assesses the diagnostic accuracy of PD-L1 immunohistochemistry, tumor mutational burden, gene expression profiling, and multiplex immunohistochemistry/immunofluorescence assays for determining treatment response to PD-1/PD-L1 checkpoint blockade. PD-L1 (programmed cell death ligand 1) immunohistochemistry (IHC), tumor mutational burden (TMB), gene expression profiling (GEP), and multiplex immunohistochemistry/immunofluorescence (mIHC/IF) assays have been used to assess pretreatment tumor tissue to predict response to anti–PD-1/PD-L1 therapies. However, the relative diagnostic performance of these modalities has yet to be established. To compare studies that assessed the diagnostic accuracy of PD-L1 IHC, TMB, GEP, and mIHC/IF in predicting response to anti–PD-1/PD-L1 therapy. A search of PubMed (from inception to June 2018) and 2013 to 2018 annual meeting abstracts from the American Association for Cancer Research, American Society of Clinical Oncology, European Society for Medical Oncology, and Society for Immunotherapy of Cancer was conducted to identify studies that examined the use of PD-L1 IHC, TMB, GEP, and mIHC/IF assays to determine objective response to anti–PD-1/PD-L1 therapy. For PD-L1 IHC, only clinical trials that resulted in US Food and Drug Administration approval of indications for anti–PD-1/PD-L1 were included. Studies combining more than 1 modality were also included. Preferred Reporting Items for Systematic Reviews and Meta-analysis guidelines were followed. Two reviewers independently extracted the clinical outcomes and test results for each individual study. Summary receiver operating characteristic (sROC) curves; their associated area under the curve (AUC); and pooled sensitivity, specificity, positive and negative predictive values (PPV, NPV), and positive and negative likelihood ratios (LR+ and LR−) for each assay modality. Tumor specimens representing over 10 different solid tumor types in 8135 patients were assayed, and the results were correlated with anti–PD-1/PD-L1 response. When each modality was evaluated with sROC curves, mIHC/IF had a significantly higher AUC (0.79) compared with PD-L1 IHC (AUC, 0.65, P  < .001), GEP (AUC, 0.65, P  = .003), and TMB (AUC, 0.69, P  = .049). When multiple different modalities were combined such as PD-L1 IHC and/or GEP + TMB, the AUC drew nearer to that of mIHC/IF (0.74). All modalities demonstrated comparable NPV and LR−, whereas mIHC/IF demonstrated higher PPV (0.63) and LR+ (2.86) than the other approaches. In this meta-analysis, tumor mutational burden, PD-L1 IHC, and GEP demonstrated comparable AUCs in predicting response to anti–PD-1/PD-L1 treatment. Multiplex immunohistochemistry/IF and multimodality biomarker strategies appear to be associated with improved performance over PD-L1 IHC, TMB, or GEP alone. Further studies with mIHC/IF and composite approaches with a larger number of patients will be required to confirm these findings. Additional study is also required to determine the most predictive analyte combinations and to determine whether biomarker modality performance varies by tumor type.

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          Pan-cancer Immunogenomic Analyses Reveal Genotype-Immunophenotype Relationships and Predictors of Response to Checkpoint Blockade.

          The Cancer Genome Atlas revealed the genomic landscapes of human cancers. In parallel, immunotherapy is transforming the treatment of advanced cancers. Unfortunately, the majority of patients do not respond to immunotherapy, making the identification of predictive markers and the mechanisms of resistance an area of intense research. To increase our understanding of tumor-immune cell interactions, we characterized the intratumoral immune landscapes and the cancer antigenomes from 20 solid cancers and created The Cancer Immunome Atlas (https://tcia.at/). Cellular characterization of the immune infiltrates showed that tumor genotypes determine immunophenotypes and tumor escape mechanisms. Using machine learning, we identified determinants of tumor immunogenicity and developed a scoring scheme for the quantification termed immunophenoscore. The immunophenoscore was a superior predictor of response to anti-cytotoxic T lymphocyte antigen-4 (CTLA-4) and anti-programmed cell death protein 1 (anti-PD-1) antibodies in two independent validation cohorts. Our findings and this resource may help inform cancer immunotherapy and facilitate the development of precision immuno-oncology.
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            Meta-DiSc: a software for meta-analysis of test accuracy data

            Background Systematic reviews and meta-analyses of test accuracy studies are increasingly being recognised as central in guiding clinical practice. However, there is currently no dedicated and comprehensive software for meta-analysis of diagnostic data. In this article, we present Meta-DiSc, a Windows-based, user-friendly, freely available (for academic use) software that we have developed, piloted, and validated to perform diagnostic meta-analysis. Results Meta-DiSc a) allows exploration of heterogeneity, with a variety of statistics including chi-square, I-squared and Spearman correlation tests, b) implements meta-regression techniques to explore the relationships between study characteristics and accuracy estimates, c) performs statistical pooling of sensitivities, specificities, likelihood ratios and diagnostic odds ratios using fixed and random effects models, both overall and in subgroups and d) produces high quality figures, including forest plots and summary receiver operating characteristic curves that can be exported for use in manuscripts for publication. All computational algorithms have been validated through comparison with different statistical tools and published meta-analyses. Meta-DiSc has a Graphical User Interface with roll-down menus, dialog boxes, and online help facilities. Conclusion Meta-DiSc is a comprehensive and dedicated test accuracy meta-analysis software. It has already been used and cited in several meta-analyses published in high-ranking journals. The software is publicly available at .
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              Programmed death ligand-1 expression in non-small cell lung cancer.

              Recent strategies targeting the interaction of the programmed cell death ligand-1 (PD-L1, B7-H1, CD274) with its receptor, PD-1, resulted in promising activity in early phase clinical trials. In this study, we used various antibodies and in situ mRNA hybridization to measure PD-L1 in non-small cell lung cancer (NSCLC) using a quantitative fluorescence (QIF) approach to determine the frequency of expression and prognostic value in two independent populations. A control tissue microarray (TMA) was constructed using PD-L1-transfected cells, normal human placenta and known PD-L1-positive NSCLC cases. Only one of four antibodies against PD-L1 (5H1) validated for specificity on this TMA. In situ PD-L1 mRNA using the RNAscope method was similarly validated. Two cohorts of NSCLC cases in TMAs including 340 cases from hospitals in Greece and 204 cases from Yale University were assessed. Tumors showed PD-L1 protein expression in 36% (Greek) and 25% (Yale) of the cases. PD-L1 expression was significantly associated with tumor-infiltrating lymphocytes in both cohorts. Patients with PD-L1 (both protein and mRNA) expression above the detection threshold showed statistically significant better outcome in both series (log-rank P=0.036 and P=0.027). Multivariate analysis showed that PD-L1 expression was significantly associated with better outcome independent of histology. Measurement of PD-L1 requires specific conditions and some commercial antibodies show lack of specificity. Expression of PD-L1 protein or mRNA is associated with better outcome. Further studies are required to determine the value of this marker in prognosis and prediction of response to treatments targeting this pathway.
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                Author and article information

                Journal
                JAMA Oncology
                JAMA Oncol
                American Medical Association (AMA)
                2374-2437
                July 18 2019
                Affiliations
                [1 ]Department of Dermatology, Johns Hopkins Medical Institutions, Baltimore, Maryland
                [2 ]Department of Pathology, Yale University School of Medicine, New Haven, Connecticut
                [3 ]Department of Medicine, Vanderbilt University Medical Center, Nashville, Tennessee
                [4 ]Department of Medicine, Division of Hematology-Oncology, Northwestern University Medical Center, and Robert H. Lurie Cancer Center, Chicago, Illinois
                [5 ]Department of Pathology, Johns Hopkins Medical Institutions, Baltimore, Maryland
                [6 ]Division of Biostatistics & Bioinformatics at the Sidney Kimmel Comprehensive Cancer Center at Johns Hopkins Medical Institutions, Baltimore, Maryland
                [7 ]Akoya Biosciences, Hopkinton, Massachusetts
                [8 ]Department of Oncology, Johns Hopkins Medical Institutions, Baltimore, Maryland
                [9 ]Bloomberg~Kimmel Institute for Cancer Immunotherapy, Johns Hopkins Medical Institutions, Baltimore, Maryland
                Article
                10.1001/jamaoncol.2019.1549
                6646995
                31318407
                fa5cd917-3a7b-40f7-b0a3-d80cd056e213
                © 2019
                History

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