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      Relationships between phyllosphere bacterial communities and plant functional traits in a neotropical forest.

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          Abstract

          The phyllosphere--the aerial surfaces of plants, including leaves--is a ubiquitous global habitat that harbors diverse bacterial communities. Phyllosphere bacterial communities have the potential to influence plant biogeography and ecosystem function through their influence on the fitness and function of their hosts, but the host attributes that drive community assembly in the phyllosphere are poorly understood. In this study we used high-throughput sequencing to quantify bacterial community structure on the leaves of 57 tree species in a neotropical forest in Panama. We tested for relationships between bacterial communities on tree leaves and the functional traits, taxonomy, and phylogeny of their plant hosts. Bacterial communities on tropical tree leaves were diverse; leaves from individual trees were host to more than 400 bacterial taxa. Bacterial communities in the phyllosphere were dominated by a core microbiome of taxa including Actinobacteria, Alpha-, Beta-, and Gammaproteobacteria, and Sphingobacteria. Host attributes including plant taxonomic identity, phylogeny, growth and mortality rates, wood density, leaf mass per area, and leaf nitrogen and phosphorous concentrations were correlated with bacterial community structure on leaves. The relative abundances of several bacterial taxa were correlated with suites of host plant traits related to major axes of plant trait variation, including the leaf economics spectrum and the wood density-growth/mortality tradeoff. These correlations between phyllosphere bacterial diversity and host growth, mortality, and function suggest that incorporating information on plant-microbe associations will improve our ability to understand plant functional biogeography and the drivers of variation in plant and ecosystem function.

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          Rebuilding community ecology from functional traits.

          There is considerable debate about whether community ecology will ever produce general principles. We suggest here that this can be achieved but that community ecology has lost its way by focusing on pairwise species interactions independent of the environment. We assert that community ecology should return to an emphasis on four themes that are tied together by a two-step process: how the fundamental niche is governed by functional traits within the context of abiotic environmental gradients; and how the interaction between traits and fundamental niches maps onto the realized niche in the context of a biotic interaction milieu. We suggest this approach can create a more quantitative and predictive science that can more readily address issues of global change.
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            Microbial biogeography: putting microorganisms on the map.

            We review the biogeography of microorganisms in light of the biogeography of macroorganisms. A large body of research supports the idea that free-living microbial taxa exhibit biogeographic patterns. Current evidence confirms that, as proposed by the Baas-Becking hypothesis, 'the environment selects' and is, in part, responsible for spatial variation in microbial diversity. However, recent studies also dispute the idea that 'everything is everywhere'. We also consider how the processes that generate and maintain biogeographic patterns in macroorganisms could operate in the microbial world.
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              Plant Ecological Strategies: Some Leading Dimensions of Variation Between Species

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                Author and article information

                Journal
                Proc. Natl. Acad. Sci. U.S.A.
                Proceedings of the National Academy of Sciences of the United States of America
                1091-6490
                0027-8424
                Sep 23 2014
                : 111
                : 38
                Affiliations
                [1 ] Département des sciences biologiques, Université du Québec à Montréal, Montreal, Quebec, Canada H3C 3P8; Institute of Ecology and Evolution, University of Oregon, Eugene, OR 97403; kembel.steven_w@uqam.ca.
                [2 ] Institute of Ecology and Evolution, University of Oregon, Eugene, OR 97403; Department of Ecology and Evolutionary Biology, University of Arizona, Tucson, AZ 85721;
                [3 ] Institute of Ecology and Evolution, University of Oregon, Eugene, OR 97403;
                [4 ] Smithsonian Tropical Research Institute, Panama 0843-03092, Panama; Department of Ecology and Evolutionary Biology, University of California, Los Angeles, CA 90095; and.
                [5 ] Smithsonian Tropical Research Institute, Panama 0843-03092, Panama;
                [6 ] Institute of Ecology and Evolution, University of Oregon, Eugene, OR 97403; Santa Fe Institute, Santa Fe, NM 87501.
                Article
                1216057111
                10.1073/pnas.1216057111
                25225376
                fa61d273-67f9-4cb7-b750-3313476aa62e
                History

                host–microbe associations,microbial ecology,plant microbiome,tropical forests

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